ENSDARG00000061490


Danio rerio

Features
Gene ID: ENSDARG00000061490
  
Biological name :u2surp
  
Synonyms : U2 snRNP-associated SURP domain containing / u2surp
  
Possible biological names infered from orthology : O15042 / Q6NV83
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 26623377
Gene end: 26642944
  
Corresponding Affymetrix probe sets: Dr.10476.1.A1_at (Zebrafish Array)   Dr.13297.1.A1_at (Zebrafish Array)   Dr.26530.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000082147
Ensembl peptide - ENSDARP00000122954
Ensembl peptide - ENSDARP00000112741
NCBI entrez gene - 567461     See in Manteia.
RefSeq - NM_001197074
RefSeq Peptide - NP_001184003
swissprot - E9QCG7
swissprot - B0S5J3
swissprot - F1RCX6
ZFIN ID - ZDB-GENE-070912-400
Ensembl - ENSDARG00000061490
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 U2SURPENSGALG00000002612Gallus gallus
 O15042ENSG00000163714Homo sapiens
 Q6NV83ENSMUSG00000032407Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zgc:163098ENSDARG0000007891151


Protein motifs (from Interpro)
Interpro ID Name
 IPR000061  SWAP/Surp
 IPR000504  RNA recognition motif domain
 IPR006569  CID domain
 IPR008942  ENTH/VHS
 IPR013170  mRNA splicing factor Cwf21 domain
 IPR035009  SR140, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr