ENSDARG00000079578


Danio rerio

Features
Gene ID: ENSDARG00000079578
  
Biological name :rbpms2b
  
Synonyms : rbpms2b / RNA binding protein with multiple splicing 2b
  
Possible biological names infered from orthology : Q6ZRY4 / Q8VC52 / RBPMS2 / RNA binding protein, mRNA processing factor 2 / RNA binding protein with multiple splicing 2
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 48252638
Gene end: 48263633
  
Corresponding Affymetrix probe sets: Dr.20582.1.S1_at (Zebrafish Array)   Dr.20582.1.S2_at (Zebrafish Array)   NM_200259_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000118336
Ensembl peptide - ENSDARP00000143130
Ensembl peptide - ENSDARP00000122677
Ensembl peptide - ENSDARP00000122203
Ensembl peptide - ENSDARP00000026087
NCBI entrez gene - 393229     See in Manteia.
RefSeq - NM_200259
RefSeq - XM_017356825
RefSeq - XM_017356826
RefSeq Peptide - NP_956553
swissprot - E9QHK7
swissprot - E9QG56
swissprot - A0A1L1QZL3
swissprot - Q7ZUL7
ZFIN ID - ZDB-GENE-040426-741
Ensembl - ENSDARG00000079578
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q9W6I1ENSGALG00000030988Gallus gallus
 Q6ZRY4ENSG00000166831Homo sapiens
 Q8VC52ENSMUSG00000032387Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbpms2a / RNA binding protein with multiple splicing 2aENSDARG0000004593088
rbpms / RNA binding protein with multiple splicing / Q93062* / RNA binding protein, mRNA processing factor*ENSDARG0000009939653


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034787  RBPMS2, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0031290 retinal ganglion cell axon guidance IGI
 biological_processGO:0048813 dendrite morphogenesis IGI
 biological_processGO:0090259 regulation of retinal ganglion cell axon guidance IGI
 cellular_componentGO:0005685 U1 snRNP IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030619 U1 snRNA binding IBA
 molecular_functionGO:0035614 snRNA stem-loop binding IBA
 molecular_functionGO:0042803 protein homodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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