ENSDARG00000086158


Danio rerio

Features
Gene ID: ENSDARG00000086158
  
Biological name :ccbe1
  
Synonyms : A8WGB1 / ccbe1 / collagen and calcium binding EGF domains 1
  
Possible biological names infered from orthology : Collagen and calcium-binding EGF domain-containing protein 1 / Q3MI99 / Q6UXH8
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 10577527
Gene end: 10676769
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000106577
Ensembl peptide - ENSDARP00000138266
NCBI entrez gene - 555629     See in Manteia.
RefSeq - NM_001163923
RefSeq Peptide - NP_001157395
swissprot - A8WGB1
swissprot - A0A0R4IPE1
ZFIN ID - ZDB-GENE-090506-7
Ensembl - ENSDARG00000086158
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000027785Gallus gallus
 ENSGALG00000033525Gallus gallus
 CCBE1ENSG00000183287Homo sapiens
 Ccbe1ENSMUSG00000046318Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000742  EGF-like domain
 IPR001881  EGF-like calcium-binding domain
 IPR008160  Collagen triple helix repeat
 IPR013032  EGF-like, conserved site
 IPR018097  EGF-like calcium-binding, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis IEA
 biological_processGO:0001945 lymph vessel development IMP
 biological_processGO:0001946 lymphangiogenesis IMP
 biological_processGO:0002040 sprouting angiogenesis IMP
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0038084 vascular endothelial growth factor signaling pathway IGI
 biological_processGO:0048514 blood vessel morphogenesis IGI
 biological_processGO:0048845 venous blood vessel morphogenesis IMP
 biological_processGO:0060855 venous endothelial cell migration involved in lymph vessel development IMP
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005581 collagen trimer IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000005 artery artery aplastic , abnormal
Show

 ZFA:0000477 posterior cardinal vein posterior cardinal vein lacks parts or has fewer parts of type lymphangiogenic sprout , abnormal
posterior cardinal vein decreased distribution , abnormal
Show

 ZFA:0001094 whole organism whole organism edematous , abnormal
Show

 ZFA:0001115 trunk trunk lymph vasculature aplastic , abnormal
Show

 ZFA:0001285 intersegmental vessel intersegmental vessel aplastic , abnormal
Show

 ZFA:0001338 intestine intestine lymphangiogenesis decreased process quality , abnormal
Show

 ZFA:0005025 dorsal longitudinal anastomotic vessel dorsal longitudinal anastomotic vessel separated from dorsal longitudinal anastomotic vessel , abnormal
dorsal longitudinal anastomotic vessel sprouting angiogenesis disrupted , abnormal
Show

 ZFA:0005108 facial lymphatic vessel facial lymphatic vessel lymphangiogenesis decreased process quality , abnormal
facial lymphatic vessel lateral region decreased length , abnormal
Show

 ZFA:0005110 thoracic duct thoracic duct aplastic , abnormal
thoracic duct absent , abnormal
thoracic duct lymphangiogenesis decreased process quality , abnormal
thoracic duct morphology , abnormal
Show

 ZFA:0005319 intersegmental lymph vessel intersegmental lymph vessel aplastic , abnormal
Show

 ZFA:0005320 dorsal longitudinal lymphatic vessel dorsal longitudinal lymphatic vessel aplastic , abnormal
Show

 ZFA:0005605 lymphangioblast cord lymphangioblast cord lymphangioblast decreased amount , abnormal
lymphangioblast cord absent , abnormal
Show

 ZFA:0005844 lymph vessel lymph vessel absent , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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