ENSG00000183287


Homo sapiens

Features
Gene ID: ENSG00000183287
  
Biological name :CCBE1
  
Synonyms : CCBE1 / collagen and calcium binding EGF domains 1 / Q6UXH8
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 18
Strand: -1
Band: q21.32
Gene start: 59430940
Gene end: 59697380
  
Corresponding Affymetrix probe sets: 229641_at (Human Genome U133 Plus 2.0 Array)   242324_x_at (Human Genome U133 Plus 2.0 Array)   243805_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000467710
Ensembl peptide - ENSP00000381241
Ensembl peptide - ENSP00000404464
NCBI entrez gene - 147372     See in Manteia.
OMIM - 612753
RefSeq - XM_017025558
RefSeq - NM_133459
RefSeq - XM_017025556
RefSeq - XM_017025557
RefSeq Peptide - NP_597716
swissprot - Q6UXH8
swissprot - K7EQ81
swissprot - A0A0A0MS88
Ensembl - ENSG00000183287
  
Related genetic diseases (OMIM): 235510 - Hennekam lymphangiectasia-lymphedema syndrome 1, 235510
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ccbe1ENSDARG00000086158Danio rerio
 ENSGALG00000027785Gallus gallus
 ENSGALG00000033525Gallus gallus
 Ccbe1ENSMUSG00000046318Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000152  EGF-type aspartate/asparagine hydroxylation site
 IPR000742  EGF-like domain
 IPR001881  EGF-like calcium-binding domain
 IPR008160  Collagen triple helix repeat
 IPR013032  EGF-like, conserved site
 IPR016133  Insect cysteine-rich antifreeze protein
 IPR018097  EGF-like calcium-binding, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis IEA
 biological_processGO:0001945 lymph vessel development IEA
 biological_processGO:0001946 lymphangiogenesis IEA
 biological_processGO:0002040 sprouting angiogenesis ISS
 biological_processGO:0003016 respiratory system process IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007585 respiratory gaseous exchange IEA
 biological_processGO:0010575 positive regulation of vascular endothelial growth factor production IDA
 biological_processGO:0010595 positive regulation of endothelial cell migration IEA
 biological_processGO:0010954 positive regulation of protein processing IDA
 biological_processGO:0030324 lung development IEA
 biological_processGO:0045766 positive regulation of angiogenesis IEA
 biological_processGO:0048845 venous blood vessel morphogenesis ISS
 biological_processGO:1900748 positive regulation of vascular endothelial growth factor signaling pathway IDA
 biological_processGO:1901492 positive regulation of lymphangiogenesis IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005615 extracellular space IDA
 molecular_functionGO:0002020 protease binding IPI
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005518 collagen binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000085 Horseshoe kidney 
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 HP:0000086 Ectopic kidney "A developmental defect in which a kidney is located in an abnormal anatomic position." [HPO:curators]
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 HP:0000126 Hydronephrosis 
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000189 Narrow palate "Width of the palate more than 2 SD below the mean (objective) or apparently decreased palatal width (subjective)." [pmid:19125428]
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 HP:0000212 Gingival hyperplasia 
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000278 Retrognathia 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000319 Flat philtrum 
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 HP:0000322 Short philtrum 
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 HP:0000337 Broad forehead "Abnormally large side-to-side distance of the forehead." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000677 Oligodontia "The condition of missing over 6 teeth (Missing up to 6 teeth is referred to a hypodontia)." [HPO:curators]
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 HP:0000684 Delayed dentition "Delayed eruption of teeth." [HPO:curators]
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 HP:0000752 Hyperactivity 
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000774 Narrow chest 
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 HP:0001004 Lymphedema 
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 HP:0001007 Hirsutism "Abnormally increased hair growth." [HPO:curators]
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 HP:0001055 Erysipelas 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001302 Pachygyria "A congenital abnormality of the cerebral hemisphere chacterized by unusually thick gyrations (convolutions) of the cerebral cortex." [HPO:curators]
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 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
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 HP:0001530 Growth retardation, mild 
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001541 Ascites 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001698 Pericardial effusion 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001760 Abnormality of the feet "An abnormality of the feet (foot deformity) is a disorder of the foot that can either be congenital or acquired. Such deformities can include hammer toe, club foot deformity, flat feet, pes cavus, Congenital vertical talus (rocker bottom foot) & etc." [HPO:curators]
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0001789 Hydrops fetalis 
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 HP:0001888 Lymphopenia 
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 HP:0002021 Pyloric stenosis 
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 HP:0002024 Malabsorption 
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 HP:0002035 Rectal prolapse 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002202 Pleural effusion "The presence of an excessive amount of fluid in the pleural cavity." [HPO:curators]
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002215 Sparse axillary hair 
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 HP:0002243 Protein-losing enteropathy 
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 HP:0002593 Intestinal lymphangiectasia 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002716 Lymphadenopathy 
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0002866 Hypoplastic iliac wings 
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 HP:0002901 Hypocalcemia "A level of blood calcium that is lower than normal." [HPO:curators]
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 HP:0003073 Hypoalbuminemia "Reduction in the concentration of albumin in the blood." [HPO:curators]
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 HP:0003298 Spina bifida occulta "The closed form of spina bifida." [HPO:curators]
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 HP:0004279 Hypoplastic hand 
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 HP:0004313 Reduced immunoglobulin levels 
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 HP:0004440 Coronal craniosynostosis 
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 HP:0005183 Pericardial lymphangiectasia 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0006482 Abnormality of dental morphology 
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 HP:0006521 Pulmonary lymphangiectasia "Abnormal dilatation of the pulmonary lymphatic vessels. Lymphatic fluid in the lung is derived from normal leakage of fluid out of the blood capillaries in the lung. In pulmonary lymphangiectasia, the pulmonary lymphatics are not properly connected and become dilated with fluid." [HPO:curators]
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 HP:0006531 Pleural lymphangiectasia 
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 HP:0007598 Bilateral single palmar creases 
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 HP:0008229 Thyroid lymphangiectasia 
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 HP:0008572 External ear malformation 
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 HP:0009473 Joint contractures involving the joints of the hand 
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 HP:0009804 Reduced number of teeth 
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 HP:0010310 Chylothorax "Accumulation of excessive amounts of lymphatic fluid (chyle) in the pleural cavity." [HPO:curators]
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 HP:0010554 Cutaneous syndactyly of the fingers "Webbing or fusion of the fingers involving soft parts only." [HPO:curators]
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 HP:0011065 Conical incisor "An abnormal `conical` (PATO:0002021) morphology of the `incisor tooth` (FMA:12823)." [HPO:ibailleulforestier]
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 HP:0011069 Increased number of teeth "The presence of a `supernumerary` (PATO:0000470), i.e., extra, `tooth` (FMA:12516) or teeth." [HPO:ibailleulforestier]
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 HP:0012368 Flat face "Absence of concavity or convexity of the face when viewed in profile." [pmid:19125436]
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 HP:0012385 Camptodactyly "The distal interphalangeal joint and/or the proximal interphalangeal joint of the fingers or toes cannot be extended to 180 degrees by either active or passive extension." [HPO:probinson]
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 HP:0100026 Arteriovenous malformations 
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0100539 Periorbital edema 
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 HP:0100764 Lymphangioma "Malformation of the lymphatic system." [HPO:sdoelken]
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 HP:0100835 Benign neoplasm of the central nervous system 
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 HP:0200055 Small hands 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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