ENSDARG00000088030


Danio rerio

Features
Gene ID: ENSDARG00000088030
  
Biological name :rpl35a
  
Synonyms : ribosomal protein L35a / rpl35a
  
Possible biological names infered from orthology : O55142 / P18077
  
Species: Danio rerio
  
Chr. number: 18
Strand: 1
Band:
Gene start: 45781115
Gene end: 45791224
  
Corresponding Affymetrix probe sets: Dr.1432.1.S1_a_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000155179
Ensembl peptide - ENSDARP00000126258
Ensembl peptide - ENSDARP00000141977
NCBI entrez gene - 436760     See in Manteia.
swissprot - I3ITJ0
swissprot - Q6DGM0
ZFIN ID - ZDB-GENE-040718-190
Ensembl - ENSDARG00000088030
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPL35AENSGALG00000007611Gallus gallus
 P18077ENSG00000182899Homo sapiens
 O55142ENSMUSG00000060636Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001780  Ribosomal protein L35A
 IPR009000  Translation protein, beta-barrel domain superfamily
 IPR018266  Ribosomal protein L35Ae, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002181 cytoplasmic translation IBA
 biological_processGO:0006412 translation IEA
 biological_processGO:0030218 erythrocyte differentiation IMP
 biological_processGO:0042273 ribosomal large subunit biogenesis IBA
 biological_processGO:0043009 chordate embryonic development IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000006 ball ball increased size , abnormal
Show

 ZFA:0000008 brain brain aplastic , abnormal
Show

 ZFA:0000029 hindbrain hindbrain opaque , abnormal
hindbrain undulate , abnormal
Show

 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary aplastic , abnormal
Show

 ZFA:0000079 telencephalon telencephalon hypoplastic , abnormal
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 ZFA:0000106 extension extension decreased thickness , abnormal
extension deformed , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000108 fin fin deformed , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle opaque , abnormal
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 ZFA:0000135 notochord notochord undulate , abnormal
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 ZFA:0000138 otic placode otic placode shape , abnormal
otic placode decreased size , abnormal
Show

 ZFA:0000152 retina retina decreased size , abnormal
Show

 ZFA:0000445 optic tectum optic tectum increased size , abnormal
optic tectum opaque , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased length , abnormal
Show

 ZFA:0001115 trunk trunk undulate , abnormal
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 ZFA:0001117 post-vent region post-vent region bent , abnormal
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 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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