ENSDARG00000095904


Danio rerio

Features
Gene ID: ENSDARG00000095904
  
Biological name :prpf31
  
Synonyms : PRP31 pre-mRNA processing factor 31 homolog (yeast) / prpf31 / Q7SXM7
  
Possible biological names infered from orthology : pre-mRNA processing factor 31 / Q8CCF0 / Q8WWY3 / U4/U6 small nuclear ribonucleoprotein Prp31
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 32082359
Gene end: 32090672
  
Corresponding Affymetrix probe sets: Dr.14102.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000117782
Ensembl peptide - ENSDARP00000157055
Ensembl peptide - ENSDARP00000120708
NCBI entrez gene - 393476     See in Manteia.
swissprot - E9QCW6
swissprot - B2GS36
swissprot - Q7SXM7
ZFIN ID - ZDB-GENE-040426-1561
Ensembl - ENSDARG00000095904
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PRPF31ENSG00000105618Homo sapiens
 Prpf31ENSMUSG00000008373Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002687  Nop domain
 IPR012976  NOSIC
 IPR019175  Prp31 C-terminal
 IPR027105  U4/U6 small nuclear ribonucleoprotein Prp31


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000244 spliceosomal tri-snRNP complex assembly IEA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0060041 retina development in camera-type eye IMP
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005687 U4 snRNP IBA
 cellular_componentGO:0005690 U4atac snRNP IBA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IEA
 cellular_componentGO:0071005 U2-type precatalytic spliceosome ISS
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071339 MLL1 complex ISS
 cellular_componentGO:0097526 spliceosomal tri-snRNP complex IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0030622 U4atac snRNA binding ISS


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain decreased size , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000114 heart heart edematous , abnormal
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 ZFA:0001094 whole organism whole organism dead , abnormal
whole organism deformed , abnormal
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 ZFA:0001117 post-vent region post-vent region curved , abnormal
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 ZFA:0009127 photoreceptor cell photoreceptor cell photoreceptor outer segment decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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