ENSDARG00000098074


Danio rerio

Features
Gene ID: ENSDARG00000098074
  
Biological name :trip4
  
Synonyms : thyroid hormone receptor interactor 4 / trip4
  
Possible biological names infered from orthology : Activating signal cointegrator 1 / Q15650 / Q9QXN3
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 53254234
Gene end: 53399285
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000136535
NCBI entrez gene - 568585     See in Manteia.
RefSeq - NM_001077575
RefSeq Peptide - NP_001071043
swissprot - A0A0R4IR18
ZFIN ID - ZDB-GENE-040724-92
Ensembl - ENSDARG00000098074
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRIP4ENSGALG00000030672Gallus gallus
 TRIP4ENSG00000103671Homo sapiens
 Trip4ENSMUSG00000032386Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007374  ASCH domain
 IPR009349  Zinc finger, C2HC5-type
 IPR015947  PUA-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001966 thigmotaxis IMP
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007409 axonogenesis IMP
 biological_processGO:0007528 neuromuscular junction development IMP
 biological_processGO:0061055 myotome development IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000075 spinal cord spinal cord motor neuron mislocalised , abnormal
Show

 ZFA:0001056 myotome myotome myofibril disorganized , abnormal
myotome neuromuscular junction decreased size , abnormal
Show

 ZFA:0009052 motor neuron motor neuron decreased length , abnormal
motor neuron fragile , abnormal
motor neuron branchiness , abnormal
motor neuron axon morphology , abnormal
motor neuron neuromuscular junction disorganized , abnormal
motor neuron neuromuscular junction decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr