ENSDARG00000098573


Danio rerio

Features
Gene ID: ENSDARG00000098573
  
Biological name :sgcd
  
Synonyms : sarcoglycan, delta (dystrophin-associated glycoprotein) / sgcd
  
Possible biological names infered from orthology : P82347 / Q92629 / sarcoglycan delta
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 35652184
Gene end: 35853245
  
Corresponding Affymetrix probe sets: DrAffx.1.87.A1_at (Zebrafish Array)   DrAffx.1.87.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000154367
Ensembl peptide - ENSDARP00000131999
NCBI entrez gene - 324961     See in Manteia.
RefSeq - NM_001001816
RefSeq Peptide - NP_001001816
swissprot - A0A0R4IBS6
swissprot - Q6TGT8
ZFIN ID - ZDB-GENE-030131-3684
Ensembl - ENSDARG00000098573
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SGCDENSGALG00000003886Gallus gallus
 SGCDENSG00000170624Homo sapiens
 SgcdENSMUSG00000020354Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SGCZ / sarcoglycan zeta / Q96LD1*ENSDARG0000010625860
sgcg / sarcoglycan, gamma / P82348* / Q13326* / sarcoglycan, gamma (dystrophin-associated glycoprotein)*ENSDARG0000003810749


Protein motifs (from Interpro)
Interpro ID Name
 IPR006875  Sarcoglycan complex subunit protein
 IPR027661  Delta-sarcoglycan


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007368 determination of left/right symmetry IMP
 biological_processGO:0007525 somatic muscle development IMP
 biological_processGO:0048738 cardiac muscle tissue development IMP
 biological_processGO:0048798 swim bladder inflation IMP
 biological_processGO:0060047 heart contraction IMP
 cellular_componentGO:0016012 sarcoglycan complex IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0042383 sarcolemma IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000114 heart heart decreased contractility , abnormal
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 ZFA:0000154 sinus venosus sinus venosus increased accumulation blood , abnormal
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 ZFA:0001374 atrial myocardium atrial myocardium decreased contractility , abnormal
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 ZFA:0005061 ventricular myocardium ventricular myocardium decreased contractility , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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