ENSG00000170624


Homo sapiens

Features
Gene ID: ENSG00000170624
  
Biological name :SGCD
  
Synonyms : Q92629 / sarcoglycan delta / SGCD
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q33.2
Gene start: 155870344
Gene end: 156767788
  
Corresponding Affymetrix probe sets: 210329_s_at (Human Genome U133 Plus 2.0 Array)   210330_at (Human Genome U133 Plus 2.0 Array)   213543_at (Human Genome U133 Plus 2.0 Array)   214492_at (Human Genome U133 Plus 2.0 Array)   228602_at (Human Genome U133 Plus 2.0 Array)   230730_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000430794
Ensembl peptide - ENSP00000338343
Ensembl peptide - ENSP00000403003
Ensembl peptide - ENSP00000429378
NCBI entrez gene - 6444     See in Manteia.
OMIM - 601411
RefSeq - XM_017009724
RefSeq - NM_000337
RefSeq - NM_001128209
RefSeq - NM_172244
RefSeq - XM_005265966
RefSeq - XM_005265967
RefSeq - XM_011534621
RefSeq - XM_017009723
RefSeq Peptide - NP_000328
RefSeq Peptide - NP_001121681
RefSeq Peptide - NP_758447
swissprot - E5RI34
swissprot - Q92629
Ensembl - ENSG00000170624
  
Related genetic diseases (OMIM): 601287 - Muscular dystrophy, limb-girdle, type 2F, 601287
  606685 - Cardiomyopathy, dilated, 1L, 606685
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sgcdENSDARG00000098573Danio rerio
 SGCDENSGALG00000003886Gallus gallus
 SgcdENSMUSG00000020354Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SGCZ / Q96LD1 / sarcoglycan zetaENSG0000018505358
SGCG / Q13326 / sarcoglycan gammaENSG0000010268352


Protein motifs (from Interpro)
Interpro ID Name
 IPR006875  Sarcoglycan complex subunit protein
 IPR027661  Delta-sarcoglycan


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007517 muscle organ development TAS
 biological_processGO:0048738 cardiac muscle tissue development IBA
 biological_processGO:0055001 muscle cell development IBA
 biological_processGO:0060047 heart contraction IBA
 biological_processGO:0061024 membrane organization IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0016010 dystrophin-associated glycoprotein complex IDA
 cellular_componentGO:0016011 dystroglycan complex IEA
 cellular_componentGO:0016012 sarcoglycan complex IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0042383 sarcolemma IBA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000982 Palmoplantar keratoderma 
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 HP:0001644 Dilated cardiomyopathy 
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 HP:0001714 Ventricular hypertrophy 
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 HP:0001874 Abnormality of neutrophil 
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 HP:0002355 Difficulty walking 
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 HP:0003198 Myopathy 
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003391 Gower sign "A phenomen whereby patients are not able to stand up without the use of the hands owing to weakness of the proximal muscles of the lower limbs." [HPO:probinson]
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 HP:0003457 Abnormal EMG findings "Abnormal results of investigations using electromyography (EMG)." [HPO:curators]
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 HP:0003560 Muscular dystrophy "The term dystrophy means abnormal growth. However, muscular dystrophy is used to describe primary myopathies with a genetic basis and a progressive course characterized by progressive skeletal muscle weakness, defects in muscle proteins, and the apoptosis of muscle cells." [HPO:curators]
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 HP:0003691 Scapular winging 
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 HP:0006673 Reduced systolic function 
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 HP:0007126 Proximal amyotrophy "Amyotrophy (muscular atrophy) affecting the proximal musculature." [HPO:curators]
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 HP:0008981 Muscular hypertrophy, esp calf muscles "Muscle hypertrophy primarily affecting the calf muscles." [HPO:curators]
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 HP:0100578 Lipoatrophy "Localized loss of fat tissue." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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