ENSDARG00000098783


Danio rerio

Features
Gene ID: ENSDARG00000098783
  
Biological name :polr2b
  
Synonyms : polr2b / polymerase (RNA) II (DNA directed) polypeptide B
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 52377557
Gene end: 52408817
  
Corresponding Affymetrix probe sets: Dr.16327.1.A1_at (Zebrafish Array)   Dr.16327.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000137138
Ensembl peptide - ENSDARP00000142035
Ensembl peptide - ENSDARP00000137902
NCBI entrez gene - 100149268     See in Manteia.
swissprot - A0A0R4IXL0
swissprot - A0A0R4ITC0
swissprot - Q6DRH1
ZFIN ID - ZDB-GENE-041008-1
Ensembl - ENSDARG00000098783
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
polr3b / polymerase (RNA) III (DNA directed) polypeptide B / Q9NW08* / RNA polymerase III subunit B*ENSDARG0000006291530


Protein motifs (from Interpro)
Interpro ID Name
 IPR007120  DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
 IPR007121  RNA polymerase, beta subunit, conserved site
 IPR007641  RNA polymerase Rpb2, domain 7
 IPR007642  RNA polymerase Rpb2, domain 2
 IPR007644  RNA polymerase, beta subunit, protrusion
 IPR007645  RNA polymerase Rpb2, domain 3
 IPR007646  RNA polymerase Rpb2, domain 4
 IPR007647  RNA polymerase Rpb2, domain 5
 IPR015712  DNA-directed RNA polymerase, subunit 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA
 molecular_functionGO:0032549 ribonucleoside binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain necrotic , abnormal
Show

 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
Show

 ZFA:0001094 whole organism whole organism viability , abnormal
whole organism necrotic , abnormal
Show

 ZFA:0001114 head head flat , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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