ENSDARG00000099453


Danio rerio

Features
Gene ID: ENSDARG00000099453
  
Biological name :elof1
  
Synonyms : ELF1 homolog, elongation factor 1 / elof1
  
Possible biological names infered from orthology : elongation factor 1 homolog / Mus musculus ELF1 homolog, elongation factor 1 (Elof1), transcript variant 4, mRNA. / P60002 / P60003
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 14496319
Gene end: 14498295
  
Corresponding Affymetrix probe sets: Dr.20158.1.A1_at (Zebrafish Array)   Dr.7869.1.S1_s_at (Zebrafish Array)   Dr.7869.1.S1_x_at (Zebrafish Array)   NM_200386_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000136794
NCBI entrez gene - 393357     See in Manteia.
RefSeq - XM_005168475
RefSeq - NM_200386
RefSeq Peptide - NP_956680
swissprot - Q7T319
ZFIN ID - ZDB-GENE-040426-1385
Ensembl - ENSDARG00000099453
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ELOF1ENSG00000130165Homo sapiens
 Elof1ENSMUSG00000013822Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007808  Transcription elongation factor 1
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006368 transcription elongation from RNA polymerase II promoter IBA
 biological_processGO:0048096 chromatin-mediated maintenance of transcription IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0008023 transcription elongation factor complex IBA
 molecular_functionGO:0000993 RNA polymerase II core binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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