ENSDARG00000099465


Danio rerio

Features
Gene ID: ENSDARG00000099465
  
Biological name :rnf213a
  
Synonyms : A0A0R4IBK5 / ring finger protein 213a / rnf213a
  
Possible biological names infered from orthology : E9Q555 / Q63HN8 / ring finger protein 213 / RNF213
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 56699187
Gene end: 56813923
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000130268
NCBI entrez gene - 503775     See in Manteia.
RefSeq - NM_001353835
RefSeq - XM_021474755
RefSeq Peptide - NP_001340764
swissprot - A0A0R4IBK5
ZFIN ID - ZDB-GENE-050302-100
Ensembl - ENSDARG00000099465
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNF213ENSGALG00000039269Gallus gallus
 Q63HN8ENSG00000173821Homo sapiens
 E9Q555ENSMUSG00000070327Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rnf213b / A0A0R4I9Y1 / ring finger protein 213bENSDARG0000010355126
CABZ01058333.1 / E9Q555* / Q63HN8* / RNF213* / ring finger protein 213*ENSDARG000001134584


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR003593  AAA+ ATPase domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR031248  RNF213 protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis IEA
 biological_processGO:0002040 sprouting angiogenesis IMP
 biological_processGO:0016567 protein ubiquitination IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000014 dorsal aorta dorsal aorta nucleate erythrocyte decreased velocity , abnormal
Show

 ZFA:0000084 yolk yolk edematous , abnormal
Show

 ZFA:0000114 heart heart dilated , abnormal
Show

 ZFA:0001056 myotome myotome has extra parts of type muscle pioneer , abnormal
myotome fast muscle cell loose , abnormal
Show

 ZFA:0001086 muscle pioneer muscle pioneer skeletal muscle cell differentiation process quality , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased amount , abnormal
whole organism anterior-posterior axis size , abnormal
Show

 ZFA:0001115 trunk trunk decreased size , abnormal
Show

 ZFA:0001267 cranial vasculature cranial vasculature angiogenesis process quality , abnormal
Show

 ZFA:0001285 intersegmental vessel intersegmental vessel angiogenic sprout morphology , abnormal
intersegmental vessel sprouting angiogenesis process quality , abnormal
intersegmental vessel blood circulation disrupted , abnormal
Show

 ZFA:0005021 cerebellar central artery cerebellar central artery angiogenesis process quality , abnormal
Show

 ZFA:0005025 dorsal longitudinal anastomotic vessel dorsal longitudinal anastomotic vessel morphology , abnormal
Show

 ZFA:0005037 post-vent vasculature post-vent vasculature increased branchiness , abnormal
Show

 ZFA:0005053 nasal ciliary artery nasal ciliary artery angiogenic sprout separated from dorsal ciliary vein , abnormal
Show

 ZFA:0005054 inner optic circle inner optic circle blood vessel increased branchiness , abnormal
Show

 ZFA:0005078 middle mesencephalic central artery middle mesencephalic central artery angiogenesis process quality , abnormal
Show

 ZFA:0005092 mesencephalic vein mesencephalic vein angiogenic sprout morphology , abnormal
Show

 ZFA:0005179 MiP motor neuron MiP motor neuron axon extension involved in axon guidance decreased process quality , abnormal
Show

 ZFA:0005180 RoP motor neuron RoP motor neuron axon extension involved in axon guidance decreased process quality , abnormal
Show

 ZFA:0005297 cranial blood vessel cranial blood vessel increased branchiness , abnormal
Show

 ZFA:0005604 angiogenic sprout angiogenic sprout endothelial cell morphology , abnormal
Show

 ZFA:0009117 fast muscle cell fast muscle cell has fewer parts of type fast muscle cell skeletal muscle myofibril, abnormal
fast muscle cell Z disc increased thickness , abnormal
fast muscle cell skeletal muscle fiber development decreased process quality , abnormal
Show

 ZFA:0009243 CaP motoneuron CaP motoneuron axon extension involved in axon guidance decreased process quality , abnormal
Show

 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte decreased fluid flow , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr