ENSDARG00000100392


Danio rerio

Features
Gene ID: ENSDARG00000100392
  
Biological name :rps18
  
Synonyms : Q8JGS9 / ribosomal protein S18 / rps18
  
Possible biological names infered from orthology : Gm10260 / Gm11361 / P62269 / P62270
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 18617608
Gene end: 18627025
  
Corresponding Affymetrix probe sets: Dr.24922.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000130813
Ensembl peptide - ENSDARP00000141432
Ensembl peptide - ENSDARP00000136169
Ensembl peptide - ENSDARP00000135459
Ensembl peptide - ENSDARP00000133054
NCBI entrez gene - 192300     See in Manteia.
swissprot - E9QHH6
swissprot - A3KQW5
swissprot - A0A0R4IP85
swissprot - A0A0R4IIP6
swissprot - Q8JGS9
ZFIN ID - ZDB-GENE-020419-20
Ensembl - ENSDARG00000100392
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPS18ENSG00000231500Homo sapiens
 Gm10260ENSMUSG00000069117Mus musculus
 Gm11361ENSMUSG00000113061Mus musculus
 Rps18ENSMUSG00000008668Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001892  Ribosomal protein S13
 IPR010979  Ribosomal protein S13-like, H2TH
 IPR018269  Ribosomal protein S13, conserved site
 IPR027437  30s ribosomal protein S13, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0042254 ribosome biogenesis IBA
 biological_processGO:0051726 regulation of cell cycle IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IBA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0015935 small ribosomal subunit IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003735 structural constituent of ribosome IEA
 molecular_functionGO:0019843 rRNA binding IEA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain quality , abnormal
Show

 ZFA:0000029 hindbrain hindbrain quality , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000084 yolk yolk circular , abnormal
Show

 ZFA:0000106 extension extension decreased thickness , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000110 fourth ventricle fourth ventricle distended , abnormal
Show

 ZFA:0000112 gut gut hypoplastic , abnormal
Show

 ZFA:0000123 liver liver hypoplastic , abnormal
Show

 ZFA:0000142 peripheral nervous system peripheral nervous system chromosome amount , abnormal
peripheral nervous system nerve neoplastic , abnormal
Show

 ZFA:0000396 nervous system nervous system quality , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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