ENSMUSG00000008668


Mus musculus

Features
Gene ID: ENSMUSG00000008668
  
Biological name :Rps18
  
Synonyms : P62270 / ribosomal protein S18 / Rps18
  
Possible biological names infered from orthology : P62269
  
Species: Mus musculus
  
Chr. number: 17
Strand: -1
Band: B1
Gene start: 33951999
Gene end: 33956001
  
Corresponding Affymetrix probe sets: 10404354 (MoGene1.0st)   10409968 (MoGene1.0st)   10411393 (MoGene1.0st)   10450063 (MoGene1.0st)   10513878 (MoGene1.0st)   10549802 (MoGene1.0st)   10581535 (MoGene1.0st)   1421837_at (Mouse Genome 430 2.0 Array)   1421838_at (Mouse Genome 430 2.0 Array)   1435712_a_at (Mouse Genome 430 2.0 Array)   1448739_x_at (Mouse Genome 430 2.0 Array)   1450390_x_at (Mouse Genome 430 2.0 Array)   1455572_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000008812
Ensembl peptide - ENSMUSP00000138296
NCBI entrez gene - 20084     See in Manteia.
MGI - MGI:98146
RefSeq - NM_011296
RefSeq Peptide - NP_035426
swissprot - P62270
swissprot - Q561N5
swissprot - S4R1N6
Ensembl - ENSMUSG00000008668
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rps18ENSDARG00000100392Danio rerio
 RPS18ENSG00000231500Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Gm11361ENSMUSG0000011306199
Gm10260ENSMUSG0000006911799


Protein motifs (from Interpro)
Interpro ID Name
 IPR001892  Ribosomal protein S13
 IPR010979  Ribosomal protein S13-like, H2TH
 IPR018269  Ribosomal protein S13, conserved site
 IPR027437  30s ribosomal protein S13, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IBA
 biological_processGO:0042254 ribosome biogenesis IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0015935 small ribosomal subunit IBA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IEA
 cellular_componentGO:0031012 extracellular matrix ISO
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003735 structural constituent of ribosome IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019843 rRNA binding IEA
 molecular_functionGO:0019901 protein kinase binding IEA


Pathways (from Reactome)
Pathway description
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Chd7Gt(XK403)Byg/Chd7+
Genetic Background: either: (involves: 129P2/OlaHsd * C57BL/6) or (involves: 129P2/OlaHsd * CD-1)

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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