ENSDARG00000100524


Danio rerio

Features
Gene ID: ENSDARG00000100524
  
Biological name :abca3b
  
Synonyms : abca3b / ATP-binding cassette, sub-family A (ABC1), member 3b
  
Possible biological names infered from orthology : Abca14 / Abca15 / Abca16 / Abca17 / ABCA3 / ATP-binding cassette, sub-family A (ABC1), member 14 / ATP-binding cassette, sub-family A (ABC1), member 15 / ATP-binding cassette, sub-family A (ABC1), member 16 / ATP-binding cassette, sub-family A (ABC1), member 17 / ATP-binding cassette, sub-family A (ABC1), member 3 / ATP binding cassette subfamily A member 3 / E9PX95 / Q8R420 / Q99758
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 12593558
Gene end: 12699905
  
Corresponding Affymetrix probe sets: Dr.23449.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000137256
Ensembl peptide - ENSDARP00000150889
Ensembl peptide - ENSDARP00000139804
NCBI entrez gene - 564344     See in Manteia.
RefSeq - XM_021473111
RefSeq - XM_021473114
swissprot - A0A0R4IUM5
swissprot - A0A0R4ISK5
ZFIN ID - ZDB-GENE-050517-2
Ensembl - ENSDARG00000100524
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ABCA3ENSGALG00000037837Gallus gallus
 ABCA3ENSG00000167972Homo sapiens
 Abca14ENSMUSG00000062017Mus musculus
 Abca15ENSMUSG00000054746Mus musculus
 Abca16ENSMUSG00000051900Mus musculus
 Abca17ENSMUSG00000035435Mus musculus
 Abca3ENSMUSG00000024130Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
abca1a / ATP-binding cassette, sub-family A (ABC1), member 1A / ABCA1* / P41233* / O95477* / ATP binding cassette subfamily A member 1* / ATP-binding cassette, sub-family A (ABC1), member 1*ENSDARG0000007463537
abca2 / ATP-binding cassette, sub-family A (ABC1), member 2 / Q9BZC7* / ATP binding cassette subfamily A member 2*ENSDARG0000001350036
abca4b / ATP-binding cassette, sub-family A (ABC1), member 4b / ABCA4* / P78363* / O35600* / ATP binding cassette subfamily A member 4* / ATP-binding cassette, sub-family A (ABC1), member 4*ENSDARG0000006266134
abca4a / ATP-binding cassette, sub-family A (ABC1), member 4a / ABCA4* / P78363* / O35600* / ATP binding cassette subfamily A member 4* / ATP-binding cassette, sub-family A (ABC1), member 4*ENSDARG0000005716934
abca12 / ATP-binding cassette, sub-family A (ABC1), member 12 / Q86UK0* / ATP binding cassette subfamily A member 12*ENSDARG0000007474928
abca5 / ATP-binding cassette, sub-family A (ABC1), member 5 / Q8K448* / Q8WWZ7* / ATP binding cassette subfamily A member 5*ENSDARG0000007404125
zgc:172302 / ABCA7* / Q8IZY2* / ATP binding cassette subfamily A member 7*ENSDARG0000007422118


Protein motifs (from Interpro)
Interpro ID Name
 IPR003439  ABC transporter-like
 IPR003593  AAA+ ATPase domain
 IPR017871  ABC transporter, conserved site
 IPR026082  ABC transporter A
 IPR026969  ATP-binding cassette sub-family A member 3
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA


Pathways (from Reactome)
Pathway description
ABC transporters in lipid homeostasis
Surfactant metabolism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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