ENSDARG00000100588


Danio rerio

Features
Gene ID: ENSDARG00000100588
  
Biological name :rpl36
  
Synonyms : Q6Q415 / ribosomal protein L36 / rpl36
  
Possible biological names infered from orthology : Q9Y3U8 / Rpl36-ps4
  
Species: Danio rerio
  
Chr. number: 22
Strand: 1
Band:
Gene start: 3153876
Gene end: 3159456
  
Corresponding Affymetrix probe sets: Dr.1335.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000138386
Ensembl peptide - ENSDARP00000141617
NCBI entrez gene - 405888     See in Manteia.
swissprot - Q6Q415
ZFIN ID - ZDB-GENE-040622-2
Ensembl - ENSDARG00000100588
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPL36ENSGALG00000000474Gallus gallus
 RPL36ENSG00000130255Homo sapiens
 Rpl36ENSMUSG00000057863Mus musculus
 Rpl36-ps4ENSMUSG00000093922Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000509  Ribosomal protein L36e


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002181 cytoplasmic translation IBA
 biological_processGO:0006412 translation IEA
 biological_processGO:0007420 brain development IMP
 biological_processGO:0051726 regulation of cell cycle IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
Show

 ZFA:0000084 yolk yolk circular , abnormal
yolk non-functional , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000112 gut gut hypoplastic , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
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 ZFA:0000140 pancreas pancreas neoplastic , abnormal
pancreas cell proliferation increased process quality , abnormal
pancreas neoplasm increased occurrence , abnormal
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 ZFA:0000142 peripheral nervous system peripheral nervous system nerve neoplastic , abnormal
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 ZFA:0001094 whole organism whole organism quality , abnormal
whole organism decreased size , abnormal
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 ZFA:0001114 head head flat , abnormal
head decreased size , abnormal
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 ZFA:0001115 trunk trunk decreased thickness , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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