ENSDARG00000101047


Danio rerio

Features
Gene ID: ENSDARG00000101047
  
Biological name :rtcb
  
Synonyms : Q6NZS4 / RNA 2,3-cyclic phosphate and 5-OH ligase / rtcb
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 676710
Gene end: 685433
  
Corresponding Affymetrix probe sets: Dr.14042.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000140069
Ensembl peptide - ENSDARP00000132958
NCBI entrez gene - 406376     See in Manteia.
RefSeq - NM_213103
RefSeq Peptide - NP_998268
swissprot - A0A0R4II58
swissprot - Q6NZS4
ZFIN ID - ZDB-GENE-040426-2096
Ensembl - ENSDARG00000101047
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000012611Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001233  tRNA-splicing ligase, RtcB
 IPR027513  tRNA-splicing ligase RtcB homologue, eukaryotic


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation ISS
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0008033 tRNA processing IEA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0072669 tRNA-splicing ligase complex ISS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003972 RNA ligase (ATP) activity ISS
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008452 RNA ligase activity IEA
 molecular_functionGO:0016874 ligase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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