ENSGALG00000012611


Gallus gallus

Features
Gene ID: ENSGALG00000012611
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology :
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 53336921
Gene end: 53349590
  
Corresponding Affymetrix probe sets: GgaAffx.8002.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000020561
NCBI entrez gene - 418064     See in Manteia.
RefSeq - XM_416300
swissprot - F1NYI3
Ensembl - ENSGALG00000012611
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rtcbENSDARG00000101047Danio rerio


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001233  tRNA-splicing ligase, RtcB
 IPR027513  tRNA-splicing ligase RtcB homologue, eukaryotic


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0008033 tRNA processing IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0072669 tRNA-splicing ligase complex IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003972 RNA ligase (ATP) activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008452 RNA ligase activity IEA
 molecular_functionGO:0016874 ligase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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