ENSDARG00000101628


Danio rerio

Features
Gene ID: ENSDARG00000101628
  
Biological name :ascl1b
  
Synonyms : achaete-scute family bHLH transcription factor 1b / ascl1b / Q90260
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 49715750
Gene end: 49717195
  
Corresponding Affymetrix probe sets: Dr.318.1.A1_at (Zebrafish Array)   NM_131231_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000022655
NCBI entrez gene - 30478     See in Manteia.
RefSeq - NM_131231
RefSeq Peptide - NP_571306
swissprot - Q90260
ZFIN ID - ZDB-GENE-980526-174
Ensembl - ENSDARG00000101628
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q90259 / ascl1a / achaete-scute family bHLH transcription factor 1a / ASCL1* / P50553* / Q02067* / Achaete-scute homolog 1 * / achaete-scute family bHLH transcription factor 1*ENSDARG0000003838661


Protein motifs (from Interpro)
Interpro ID Name
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain
 IPR015660  Achaete-scute transcription factor-related


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0007420 brain development IEP
 biological_processGO:0021575 hindbrain morphogenesis IMP
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0031018 endocrine pancreas development IMP
 biological_processGO:0043009 chordate embryonic development IEP
 biological_processGO:0045666 positive regulation of neuron differentiation ISS
 biological_processGO:0050767 regulation of neurogenesis IBA
 cellular_componentGO:0005634 nucleus IC
 cellular_componentGO:0090575 RNA polymerase II transcription factor complex IBA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0000989 transcription factor activity, transcription factor binding ISS
 molecular_functionGO:0003677 DNA binding ISS
 molecular_functionGO:0003700 DNA-binding transcription factor activity NAS
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0005743 pancreatic D cell pancreatic D cell decreased amount , abnormal
Show

 ZFA:0009105 somatostatin secreting cell somatostatin secreting cell decreased distribution , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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