ENSDARG00000102890


Danio rerio

Features
Gene ID: ENSDARG00000102890
  
Biological name :clrn1
  
Synonyms : clarin 1 / clrn1
  
Possible biological names infered from orthology : AC020636.2 / P58418 / Q8K445
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 3947696
Gene end: 3956906
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000140380
NCBI entrez gene - 436944     See in Manteia.
RefSeq - NM_001002671
RefSeq Peptide - NP_001002671
swissprot - A0A0R4IX37
swissprot - Q6DGA8
ZFIN ID - ZDB-GENE-040718-420
Ensembl - ENSDARG00000102890
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000010384Gallus gallus
 AC020636.2ENSG00000260234Homo sapiens
 CLRN1ENSG00000163646Homo sapiens
 Clrn1ENSMUSG00000043850Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
clrn2 / clarin 2 / A0PK11*ENSDARG0000007032136
clrn3 / clarin 3 / Q8NCR9*ENSDARG0000010046520


Protein motifs (from Interpro)
Interpro ID Name
 IPR026748  Clarin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007605 sensory perception of sound IMP
 biological_processGO:0008104 protein localization IMP
 biological_processGO:0035418 protein localization to synapse IMP
 biological_processGO:0036466 synaptic vesicle recycling via endosome IMP
 biological_processGO:0050808 synapse organization IMP
 biological_processGO:0050957 equilibrioception IMP
 biological_processGO:0060271 cilium assembly IMP
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0032421 stereocilium bundle IDA
 cellular_componentGO:0035869 ciliary transition zone IDA
 cellular_componentGO:0098794 postsynapse IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000678 hair cell anterior macula hair cell anterior macula terminal bouton increased amount , abnormal
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 ZFA:0000940 posterior lateral line neuromast posterior lateral line neuromast decreased amount , abnormal
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 ZFA:0001094 whole organism whole organism anterior-posterior axis decreased length , abnormal
whole organism unbalanced , abnormal
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 ZFA:0001115 trunk trunk curved ventral , abnormal
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 ZFA:0001472 anterior lateral line neuromast anterior lateral line neuromast decreased amount , abnormal
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 ZFA:0009366 hair cell hair cell stereocilium bundle absent , abnormal
hair cell stereocilium bundle splayed , abnormal
hair cell stereocilium bundle shortened , abnormal
hair cell decreased functionality , abnormal
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 ZFA:0009367 neuromast hair cell neuromast hair cell terminal bouton increased amount , abnormal
neuromast hair cell kinocilium decreased length , abnormal
neuromast hair cell decreased functionality , abnormal
neuromast hair cell action potential decreased process quality , abnormal
neuromast hair cell membrane depolarization during action potential decreased process quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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