ENSDARG00000102960


Danio rerio

Features
Gene ID: ENSDARG00000102960
  
Biological name :vps54
  
Synonyms : vacuolar protein sorting 54 homolog (S. cerevisiae) / vps54
  
Possible biological names infered from orthology : Q5SPW0 / Q9P1Q0 / VPS54, GARP complex subunit
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 55006945
Gene end: 55044371
  
Corresponding Affymetrix probe sets: Dr.21814.1.S1_at (Zebrafish Array)   Dr.21814.1.S1_s_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000131039
Ensembl peptide - ENSDARP00000138816
Ensembl peptide - ENSDARP00000136610
Ensembl peptide - ENSDARP00000133406
NCBI entrez gene - 562169     See in Manteia.
RefSeq - NM_001130776
RefSeq Peptide - NP_001124248
swissprot - A0A0R4IIL8
swissprot - A0A0R4IQF8
swissprot - A0A0R4IA59
swissprot - A0A0R4IME0
ZFIN ID - ZDB-GENE-081022-176
Ensembl - ENSDARG00000102960
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VPS54ENSGALG00000008847Gallus gallus
 VPS54ENSG00000143952Homo sapiens
 Vps54ENSMUSG00000020128Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR012501  Vps54-likeVacuolar protein sorting-associated protein 54, C-terminal
 IPR019515  Vacuolar protein sorting-associated protein 54, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0042147 retrograde transport, endosome to Golgi IEA
 cellular_componentGO:0005829 cytosol IEA


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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