ENSDARG00000104374


Danio rerio

Features
Gene ID: ENSDARG00000104374
  
Biological name :smchd1
  
Synonyms : smchd1 / structural maintenance of chromosomes flexible hinge domain containing 1
  
Possible biological names infered from orthology : A6NHR9 / Q6P5D8 / Structural maintenance of chromosomes flexible hinge domain-containing protein 1
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 71586485
Gene end: 71655272
  
Corresponding Affymetrix probe sets: Dr.18590.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000140355
NCBI entrez gene - 497282     See in Manteia.
RefSeq - XM_009303635
swissprot - A0A0G2L6F5
ZFIN ID - ZDB-GENE-050211-6
Ensembl - ENSDARG00000104374
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SMCHD1ENSGALG00000014811Gallus gallus
 A6NHR9ENSG00000101596Homo sapiens
 Q6P5D8ENSMUSG00000024054Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003594  Histidine kinase/HSP90-like ATPase
 IPR010935  SMCs flexible hinge


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0051276 chromosome organization IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000095 pharyngeal arch 3-7 skeleton pharyngeal arch 3-7 skeleton has fewer parts of type ceratobranchial cartilage , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0001356 terminal nerve terminal nerve decreased length , abnormal
Show

 ZFA:0001400 ceratohyal cartilage ceratohyal cartilage malformed , abnormal
Show

 ZFA:0001405 ethmoid cartilage ethmoid cartilage decreased width , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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