ENSDARG00000104938


Danio rerio

Features
Gene ID: ENSDARG00000104938
  
Biological name :ftsj3
  
Synonyms : ftsj3 / FtsJ RNA methyltransferase homolog 3
  
Possible biological names infered from orthology : pre-rRNA processing protein FTSJ3 / Q8IY81 / Q9DBE9
  
Species: Danio rerio
  
Chr. number: 22
Strand: 1
Band:
Gene start: 3184500
Gene end: 3214544
  
Corresponding Affymetrix probe sets: Dr.16133.1.A1_a_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000136961
Ensembl peptide - ENSDARP00000143621
NCBI entrez gene - 321247     See in Manteia.
swissprot - A0A0R4IQB8
swissprot - A0A286Y8W6
ZFIN ID - ZDB-GENE-030131-9828
Ensembl - ENSDARG00000104938
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FTSJ3ENSGALG00000032993Gallus gallus
 FTSJ3ENSG00000108592Homo sapiens
 Ftsj3ENSMUSG00000020706Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002877  Ribosomal RNA methyltransferase FtsJ domain
 IPR012920  Ribosomal RNA methyltransferase, Spb1, C-terminal
 IPR015507  Ribosomal RNA large subunit methyltransferase E
 IPR024576  Ribosomal RNA methyltransferase Spb1, domain of unknown function DUF3381
 IPR028589  AdoMet-dependent rRNA methyltransferase, Spb1
 IPR029063  S-adenosyl-L-methionine-dependent methyltransferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000453 enzyme-directed rRNA 2"-O-methylation IEA
 biological_processGO:0001510 RNA methylation IEA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0031167 rRNA methylation IEA
 biological_processGO:0032259 methylation IEA
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0030688 preribosome, small subunit precursor IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0008649 rRNA methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr