ENSG00000008988


Homo sapiens

Features
Gene ID: ENSG00000008988
  
Biological name :RPS20
  
Synonyms : P60866 / ribosomal protein S20 / RPS20
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: -1
Band: q12.1
Gene start: 56067295
Gene end: 56074581
  
Corresponding Affymetrix probe sets: 200949_x_at (Human Genome U133 Plus 2.0 Array)   214003_x_at (Human Genome U133 Plus 2.0 Array)   216247_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000429049
Ensembl peptide - ENSP00000429333
Ensembl peptide - ENSP00000478703
Ensembl peptide - ENSP00000429374
Ensembl peptide - ENSP00000009589
Ensembl peptide - ENSP00000427788
Ensembl peptide - ENSP00000427860
Ensembl peptide - ENSP00000428104
Ensembl peptide - ENSP00000428146
NCBI entrez gene - 6224     See in Manteia.
OMIM - 603682
RefSeq - NM_001146227
RefSeq - NM_001023
RefSeq Peptide - NP_001014
RefSeq Peptide - NP_001139699
swissprot - P60866
swissprot - E5RIP1
swissprot - G3XAN0
swissprot - E5RJX2
Ensembl - ENSG00000008988
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPS20ENSGALG00000014432Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001848  Ribosomal protein S10
 IPR005729  Ribosomal protein S10, eukaryotic/archaeal
 IPR018268  Ribosomal protein S10, conserved site
 IPR027486  Ribosomal protein S10 domain
 IPR036838  Ribosomal protein S10 domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS
 biological_processGO:0002181 cytoplasmic translation IBA
 biological_processGO:0006364 rRNA processing TAS
 biological_processGO:0006412 translation NAS
 biological_processGO:0006413 translational initiation TAS
 biological_processGO:0006614 SRP-dependent cotranslational protein targeting to membrane TAS
 biological_processGO:0019083 viral transcription TAS
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0015935 small ribosomal subunit IEA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0003735 structural constituent of ribosome NAS
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
Peptide chain elongation
SRP-dependent cotranslational protein targeting to membrane
Viral mRNA Translation
Selenocysteine synthesis
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Eukaryotic Translation Termination
Regulation of expression of SLITs and ROBOs
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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