ENSG00000011275


Homo sapiens

Features
Gene ID: ENSG00000011275
  
Biological name :RNF216
  
Synonyms : Q9NWF9 / ring finger protein 216 / RNF216
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: p22.1
Gene start: 5620047
Gene end: 5781739
  
Corresponding Affymetrix probe sets: 1563361_at (Human Genome U133 Plus 2.0 Array)   218425_at (Human Genome U133 Plus 2.0 Array)   218426_s_at (Human Genome U133 Plus 2.0 Array)   227065_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000374550
Ensembl peptide - ENSP00000396829
Ensembl peptide - ENSP00000404602
Ensembl peptide - ENSP00000409837
Ensembl peptide - ENSP00000374552
NCBI entrez gene - 54476     See in Manteia.
OMIM - 609948
RefSeq - XM_017012365
RefSeq - NM_207111
RefSeq - NM_207116
RefSeq - XM_005249785
RefSeq - XM_011515436
RefSeq - XM_017012363
RefSeq - XM_017012364
RefSeq Peptide - NP_996994
RefSeq Peptide - NP_996999
swissprot - F8W6D1
swissprot - F8WDI8
swissprot - Q9NWF9
swissprot - C9JIV3
Ensembl - ENSG00000011275
  
Related genetic diseases (OMIM): 212840 - Cerebellar ataxia and hypogonadotropic hypogonadism, 212840
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rnf216ENSDARG00000087893Danio rerio
 RNF216ENSGALG00000004629Gallus gallus
 P58283ENSMUSG00000045078Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002867  IBR domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0016032 viral process IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0032480 negative regulation of type I interferon production TAS
 biological_processGO:0032648 regulation of interferon-beta production IDA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IDA
 biological_processGO:0050691 regulation of defense response to virus by host IDA
 biological_processGO:0070936 protein K48-linked ubiquitination IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity EXP


Pathways (from Reactome)
Pathway description
Negative regulators of DDX58/IFIH1 signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000044 Hypogonadotrophic hypogonadism "Hypogonadotropic hypogonadism is characterized by reduced function of the gonads (testes in males or ovaries in females) and results from the absence of the gonadal stimulating pituitary hormones: follicle stimulating hormone (FSH) and luteinizing hormone (LH)." [HPO:curators]
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 HP:0000144 Decreased fertility 
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000726 Dementia 
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 HP:0000751 Personality changes 
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 HP:0000771 Gynecomastia 
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 HP:0000789 Infertility 
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 HP:0000864 Abnormality of the hypothalamus-pituitary axis 
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 HP:0000876 Oligomenorrhea 
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 HP:0000924 Abnormality of the musculoskeletal system "An abnormality of the musculoskeletal system including one or more abnormalities affecting bones, muscles, cartilage, tendons, ligaments, joints, and other connective tissue." [HPO:curators]
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 HP:0001135 Chorioretinal dystrophy 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001939 Metabolism abnormality 
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 HP:0002059 Cerebral atrophy 
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 HP:0002167 Neurological speech impairment 
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 HP:0002558 Supernumerary nipples 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
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 HP:0007703 Abnormal retinal pigmentation 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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