ENSG00000016391


Homo sapiens

Features
Gene ID: ENSG00000016391
  
Biological name :CHDH
  
Synonyms : CHDH / choline dehydrogenase / Q8NE62
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: p21.1
Gene start: 53812335
Gene end: 53846390
  
Corresponding Affymetrix probe sets: 1559590_at (Human Genome U133 Plus 2.0 Array)   1559591_s_at (Human Genome U133 Plus 2.0 Array)   228560_at (Human Genome U133 Plus 2.0 Array)   229502_at (Human Genome U133 Plus 2.0 Array)   229954_at (Human Genome U133 Plus 2.0 Array)   230484_at (Human Genome U133 Plus 2.0 Array)   231994_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000418273
Ensembl peptide - ENSP00000419863
Ensembl peptide - ENSP00000319851
NCBI entrez gene - 55349     See in Manteia.
RefSeq - XM_017006799
RefSeq - XM_011533938
RefSeq - XM_011533939
RefSeq - XM_017006797
RefSeq - XM_017006798
RefSeq - NM_018397
RefSeq - XM_006713250
RefSeq - XM_006713251
RefSeq - XM_006713252
RefSeq Peptide - NP_060867
swissprot - C9JYW4
swissprot - C9J7D8
swissprot - Q8NE62
Ensembl - ENSG00000016391
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 chdhENSDARG00000100304Danio rerio
 CHDHENSGALG00000005363Gallus gallus
 ChdhENSMUSG00000015970Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000172  Glucose-methanol-choline oxidoreductase, N-terminal
 IPR007867  Glucose-methanol-choline oxidoreductase, C-terminal
 IPR012132  Glucose-methanol-choline oxidoreductase
 IPR036188  FAD/NAD(P)-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0019285 glycine betaine biosynthetic process from choline IEA
 biological_processGO:0042426 choline catabolic process TAS
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005743 mitochondrial inner membrane TAS
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008812 choline dehydrogenase activity TAS
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEA
 molecular_functionGO:0050660 flavin adenine dinucleotide binding IEA


Pathways (from Reactome)
Pathway description
Choline catabolism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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