ENSG00000032444


Homo sapiens

Features
Gene ID: ENSG00000032444
  
Biological name :PNPLA6
  
Synonyms : patatin like phospholipase domain containing 6 / PNPLA6 / Q8IY17
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: p13.2
Gene start: 7534004
Gene end: 7561764
  
Corresponding Affymetrix probe sets: 203718_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000473211
Ensembl peptide - ENSP00000221249
Ensembl peptide - ENSP00000394348
Ensembl peptide - ENSP00000470060
Ensembl peptide - ENSP00000469794
Ensembl peptide - ENSP00000469171
Ensembl peptide - ENSP00000443323
Ensembl peptide - ENSP00000407509
Ensembl peptide - ENSP00000496219
Ensembl peptide - ENSP00000470461
Ensembl peptide - ENSP00000470608
Ensembl peptide - ENSP00000472456
Ensembl peptide - ENSP00000472572
Ensembl peptide - ENSP00000472631
NCBI entrez gene - 10908     See in Manteia.
OMIM - 603197
RefSeq - NM_001166112
RefSeq - NM_001166114
RefSeq - NM_006702
RefSeq - NM_001166111
RefSeq - NM_001166113
RefSeq Peptide - NP_001159585
RefSeq Peptide - NP_001159584
RefSeq Peptide - NP_001159583
RefSeq Peptide - NP_006693
RefSeq Peptide - NP_001159586
swissprot - Q8IY17
swissprot - M0QXH7
swissprot - M0QYF5
swissprot - M0QYT1
swissprot - M0QZD1
swissprot - M0QZK5
swissprot - M0R2C2
swissprot - M0R2H4
swissprot - M0R2K2
Ensembl - ENSG00000032444
  
Related genetic diseases (OMIM): 215470 - Boucher-Neuhauser syndrome, 215470
  245800 - ?Laurence-Moon syndrome, 245800
  275400 - Oliver-McFarlane syndrome, 275400
  612020 - Spastic paraplegia 39, autosomal recessive, 612020
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pnpla6ENSDARG00000010773Danio rerio
 Pnpla6ENSMUSG00000004565Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PNPLA7 / Q6ZV29 / patatin like phospholipase domain containing 7ENSG0000013065359


Protein motifs (from Interpro)
Interpro ID Name
 IPR000595  Cyclic nucleotide-binding domain
 IPR001423  Lysophospholipase patatin, conserved site
 IPR002641  Patatin-like phospholipase domain
 IPR014710  RmlC-like jelly roll fold
 IPR016035  Acyl transferase/acyl hydrolase/lysophospholipase
 IPR018490  Cyclic nucleotide-binding-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0016042 lipid catabolic process IEA
 biological_processGO:0032502 developmental process IBA
 biological_processGO:0046470 phosphatidylcholine metabolic process IEA
 biological_processGO:0046475 glycerophospholipid catabolic process TAS
 cellular_componentGO:0005783 endoplasmic reticulum IBA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004622 lysophospholipase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Glycerophospholipid catabolism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000044 Hypogonadotrophic hypogonadism "Hypogonadotropic hypogonadism is characterized by reduced function of the gonads (testes in males or ovaries in females) and results from the absence of the gonadal stimulating pituitary hormones: follicle stimulating hormone (FSH) and luteinizing hormone (LH)." [HPO:curators]
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 HP:0000046 Scrotal hypoplasia 
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 HP:0000054 Micropenis 
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 HP:0000083 Renal failure 
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 HP:0000144 Decreased fertility 
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000527 Long eyelashes "Mid upper eyelash length >10 mm or increased length of the eyelashes (subjective)." [pmid:19125427]
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 HP:0000529 Progressive visual loss 
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 HP:0000556 Retinal dystrophy 
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 HP:0000580 Pigmentary retinopathy 
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 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000726 Dementia 
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 HP:0000751 Personality changes 
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 HP:0000771 Gynecomastia 
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 HP:0000823 Delayed puberty 
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 HP:0000824 Growth hormone deficiency "Insufficient production of growth hormone, which is produced by the anterior pituitary gland." [HPO:curators]
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 HP:0000864 Abnormality of the hypothalamus-pituitary axis 
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 HP:0001135 Chorioretinal dystrophy 
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 HP:0001155 Abnormality of the hand "An abnormality affecting one or both hands." [HPO:curators]
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 HP:0001156 Brachydactyly 
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 HP:0001161 Polydactyly (hands) 
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 HP:0001249 Mental retardation 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001258 Spastic paraplegia 
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 HP:0001265 Hyporeflexia 
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 HP:0001272 Cerebellar atrophy 
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 HP:0001284 Areflexia 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001518 Low birth weight 
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 HP:0001939 Metabolism abnormality 
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 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
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 HP:0002080 Intention tremor "An oscillatory cerebellar ataxia that tends to be absent when the limbs are inactive and during the first part of voluntary movement but worsening as the movement continues and greater precision is required (e.g., in touching a target such as the patient s nose or a physician s finger)." [HPO:curators]
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 HP:0002127 Upper motor neuron abnormality 
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 HP:0002167 Neurological speech impairment 
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 HP:0002168 Scanning speech 
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0002558 Supernumerary nipples 
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 HP:0002612 Congenital hepatic fibrosis 
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 HP:0003477 Axonal neuropathy 
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003510 Short stature, severe "A severe degree of short stature." [HPO:curators]
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 HP:0003621 Juvenile onset 
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 HP:0003676 Progressive disorder 
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 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
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 HP:0003812 Phenotypic variability 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004374 Hemiplegia/hemiparesis "Loss of strength in the arm, leg, and sometimes face on one side of the body. Hemiplegia refers to a severe or complete loss of strength, whereas hemiparesis refers to a relatively mild loss of strength." [HPO:curators]
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 HP:0004523 very long eyelashes and eyebrows 
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0006827 MRI shows atrophy of the spinal cord 
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 HP:0007002 Sensory and motor axonal neuropathy 
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 HP:0007020 Progressive spastic paraplegia 
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 HP:0007263 Spinocerebellar atrophy 
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 HP:0007598 Bilateral single palmar creases 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007818 Ring iris heterochromia 
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 HP:0008736 Hypoplasia of penis 
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 HP:0009053 Muscle weakness, lower limb, distal "Weakness of the distal muscles of the legs." [HPO:curators]
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 HP:0009055 Generalized limb muscle atrophy "Generalized atrophy affecting muscles of the limbs." [HPO:curators]
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 HP:0009896 Abnormality of the antitragus "An abnormality of the antitrgus, which is a small tubercle opposite to the tragus of the ear. The antitragus and the tragus are separated by the intertragic notch." [HPO:curators]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0100627 Displacement of the external urethral meatus "A displacement of the external urethral orifice from its normal position (in males normally placed at the tip of glans penis, in females normally placed about 2.5 cm behind the glans clitoridis and immediately in front of that of the vagina)." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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