ENSG00000064490


Homo sapiens

Features
Gene ID: ENSG00000064490
  
Biological name :RFXANK
  
Synonyms : O14593 / regulatory factor X associated ankyrin containing protein / RFXANK
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: p13.11
Gene start: 19192229
Gene end: 19201869
  
Corresponding Affymetrix probe sets: 202758_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000441042
Ensembl peptide - ENSP00000440325
Ensembl peptide - ENSP00000444280
Ensembl peptide - ENSP00000466913
Ensembl peptide - ENSP00000305071
Ensembl peptide - ENSP00000376138
Ensembl peptide - ENSP00000384572
Ensembl peptide - ENSP00000393159
Ensembl peptide - ENSP00000409138
Ensembl peptide - ENSP00000440321
NCBI entrez gene - 8625     See in Manteia.
OMIM - 603200
RefSeq - XM_017027416
RefSeq - NM_001278727
RefSeq - NM_001278728
RefSeq - NM_003721
RefSeq - NM_134440
RefSeq - XM_005260134
RefSeq - XM_005260135
RefSeq - XM_005260136
RefSeq - XM_005260137
RefSeq - XM_006722930
RefSeq - XM_017027415
RefSeq Peptide - NP_001265656
RefSeq Peptide - NP_003712
RefSeq Peptide - NP_604389
RefSeq Peptide - NP_001265657
swissprot - H0YFU5
swissprot - H0YFZ0
swissprot - H0YGQ6
swissprot - K7ENE6
swissprot - A0A024R7M1
swissprot - O14593
swissprot - A0A024R7P0
swissprot - F5GY33
swissprot - F5H7D2
Ensembl - ENSG00000064490
  
Related genetic diseases (OMIM): 209920 - MHC class II deficiency, complementation group B, 209920

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rfxankENSDARG00000016730Danio rerio
 RFXANKENSGALG00000037261Gallus gallus
 Q9Z205ENSMUSG00000036120Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ANKRA2 / Q9H9E1 / ankyrin repeat family A member 2ENSG0000016433150


Protein motifs (from Interpro)
Interpro ID Name
 IPR002110  Ankyrin repeat
 IPR017362  DNA-binding, RFXANK
 IPR020683  Ankyrin repeat-containing domain
 IPR036770  Ankyrin repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0007265 Ras protein signal transduction IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0045171 intercellular bridge IDA
 molecular_functionGO:0003677 DNA binding TAS
 molecular_functionGO:0003700 DNA-binding transcription factor activity NAS
 molecular_functionGO:0003712 transcription coregulator activity TAS
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0042826 histone deacetylase binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000010 Recurrent urinary tract infections "Repeated infections of the urinary tract." [HPO:curators]
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 HP:0001080 Biliary tract abnormality 
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 HP:0001508 Failure to thrive 
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 HP:0001875 Neutropenia 
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 HP:0002024 Malabsorption 
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 HP:0002383 Encephalitis 
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 HP:0002583 Severe colitis 
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 HP:0002718 Recurrent bacterial infections 
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 HP:0002728 Chronic mucocutaneous candidiasis 
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 HP:0002783 Recurrent lower respiratory tract infections 
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 HP:0002788 Recurrent upper respiratory tract infections 
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 HP:0002841 Fungal infections, recurrent 
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 HP:0002965 Cutaneous anergy 
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 HP:0003139 Panhypogammaglobulinemia 
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 HP:0004385 Protracted diarrhea 
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 HP:0004429 Recurrent viral infections 
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 HP:0004432 Agammaglobulinemia 
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 HP:0005386 Frequent bacterial, viral, protozoan, and fungal infections 
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 HP:0006562 Viral hepatitis 
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 HP:0007041 Chronic lymphocytic meningitis 
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 HP:0011473 Villous atrophy "The enteric villi are atrophic or absent." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr