ENSG00000070413


Homo sapiens

Features
Gene ID: ENSG00000070413
  
Biological name :DGCR2
  
Synonyms : DGCR2 / DiGeorge syndrome critical region gene 2 / P98153
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 22
Strand: -1
Band: q11.21
Gene start: 19036282
Gene end: 19122454
  
Corresponding Affymetrix probe sets: 1566236_at (Human Genome U133 Plus 2.0 Array)   202099_s_at (Human Genome U133 Plus 2.0 Array)   214198_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000445069
Ensembl peptide - ENSP00000263196
Ensembl peptide - ENSP00000373914
Ensembl peptide - ENSP00000440062
NCBI entrez gene - 9993     See in Manteia.
OMIM - 600594
RefSeq - NM_001173533
RefSeq - NM_001173534
RefSeq - NM_001184781
RefSeq - NM_005137
RefSeq Peptide - NP_001167005
RefSeq Peptide - NP_001167004
RefSeq Peptide - NP_005128
RefSeq Peptide - NP_001171710
swissprot - P98153
swissprot - F6SYP7
swissprot - B7Z3C4
Ensembl - ENSG00000070413
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 dgcr2ENSDARG00000042962Danio rerio
 DGCR2ENSGALG00000005891Gallus gallus
 Dgcr2ENSMUSG00000003166Mus musculus
 Gm20518ENSMUSG00000092470Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001007  VWFC domain
 IPR001304  C-type lectin-like
 IPR002172  Low-density lipoprotein (LDL) receptor class A repeat
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold
 IPR023415  Low-density lipoprotein (LDL) receptor class A, conserved site
 IPR034010  DGCR2-like, C-type lectin-like domain
 IPR036055  LDL receptor-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0009887 animal organ morphogenesis TAS
 biological_processGO:0050890 cognition IMP
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0030246 carbohydrate binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000194 Open mouth 
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 HP:0000201 Pierre-Robin sequence 
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 HP:0000220 Velopharyngeal insufficiency 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000278 Retrognathia 
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 HP:0000414 Bulbous nose 
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 HP:0000430 Hypoplastic nasal alae "Thinned, deficient, or excessively arched `ala nasi` (FMA:59519)." [pmid:19152422]
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 HP:0000581 Blepharophimosis "Reduced width of the palpebral fissures." [HPO:sdoelken]
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 HP:0000598 Abnormality of the ears 
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 HP:0000627 Posterior embryotoxon 
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000720 Mood swings "An exaggeration of emotional affects such as laughing crying, or yawning beyond what the person feels." [HPO:curators]
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 HP:0000818 Endocrine abnormality 
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 HP:0001155 Abnormality of the hand "An abnormality affecting one or both hands." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001328 Learning disability 
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001611 Nasal speech 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
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 HP:0002627 Right aortic arch 
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 HP:0002719 Recurrent infections 
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 HP:0002901 Hypocalcemia "A level of blood calcium that is lower than normal." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005435 Impaired T cell function 
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 HP:0006549 Primary pulmonary dysgenesis, unilateral 
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 HP:0011999 Paranoia "A persecutory delusion of supposed hostility of others." [HPO:probinson]
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 HP:0012841 Retinal vascular tortuosity "The presence of an increased number of twists and turns of the retinal blood vessels." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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