ENSG00000084693


Homo sapiens

Features
Gene ID: ENSG00000084693
  
Biological name :AGBL5
  
Synonyms : AGBL5 / ATP/GTP binding protein like 5 / Q8NDL9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: p23.3
Gene start: 27042364
Gene end: 27070622
  
Corresponding Affymetrix probe sets: 218480_at (Human Genome U133 Plus 2.0 Array)   231857_s_at (Human Genome U133 Plus 2.0 Array)   238889_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000394730
Ensembl peptide - ENSP00000433830
Ensembl peptide - ENSP00000407584
Ensembl peptide - ENSP00000400905
Ensembl peptide - ENSP00000395721
Ensembl peptide - ENSP00000395266
Ensembl peptide - ENSP00000323681
Ensembl peptide - ENSP00000353249
NCBI entrez gene - 60509     See in Manteia.
OMIM - 615900
RefSeq - XM_011533013
RefSeq - NM_001035507
RefSeq - NM_021831
RefSeq - XM_005264477
RefSeq - XM_011533011
RefSeq - XM_011533012
RefSeq Peptide - NP_068603
RefSeq Peptide - NP_001030584
swissprot - C9JCE1
swissprot - C9JQG9
swissprot - H7C1L5
swissprot - C9JTY1
swissprot - Q8NDL9
swissprot - C9JHM6
Ensembl - ENSG00000084693
  
Related genetic diseases (OMIM): 617023 - Retinitis pigmentosa 75, 617023
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 agbl5ENSDARG00000045900Danio rerio
 AGBL5ENSGALG00000038639Gallus gallus
 Agbl5ENSMUSG00000029165Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AGBL2 / Q5U5Z8 / ATP/GTP binding protein like 2ENSG0000016592321
AGBL4 / Q5VU57 / ATP/GTP binding protein like 4ENSG0000018609419
AGBL3 / Q8NEM8 / ATP/GTP binding protein like 3ENSG0000014685619
Q9UPW5 / AGTPBP1 / ATP/GTP binding protein 1ENSG0000013504917
AGBL1 / Q96MI9 / ATP/GTP binding protein like 1ENSG0000027354015


Protein motifs (from Interpro)
Interpro ID Name
 IPR000834  Peptidase M14, carboxypeptidase A
 IPR034286  Cytosolic carboxypeptidase-like protein 5 catalytic domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0035608 protein deglutamylation ISS
 biological_processGO:0035611 protein branching point deglutamylation IEA
 biological_processGO:0051607 defense response to virus IEA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005819 spindle IEA
 cellular_componentGO:0005829 cytosol ISS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0015630 microtubule cytoskeleton IDA
 cellular_componentGO:0030496 midbody IEA
 cellular_componentGO:0045171 intercellular bridge IDA
 cellular_componentGO:0072686 mitotic spindle IDA
 molecular_functionGO:0004180 carboxypeptidase activity IEA
 molecular_functionGO:0004181 metallocarboxypeptidase activity ISS
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008237 metallopeptidase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0015631 tubulin binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Carboxyterminal post-translational modifications of tubulin


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000035 Abnormality of the testis 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000545 Myopia 
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000602 Ophthalmoplegia 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000662 Night blindness 
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 HP:0000842 Hyperinsulinemia 
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 HP:0000987 Scarring 
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 HP:0001249 Mental retardation 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0007675 Progressive night blindness 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007994 Peripheral visual field loss 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008736 Hypoplasia of penis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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