ENSG00000087302


Homo sapiens

Features
Gene ID: ENSG00000087302
  
Biological name :RTRAF
  
Synonyms : Q9Y224 / RNA transcription, translation and transport factor / RTRAF
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: 1
Band: q22.1
Gene start: 51989475
Gene end: 52010691
  
Corresponding Affymetrix probe sets: 217768_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000451153
Ensembl peptide - ENSP00000451715
Ensembl peptide - ENSP00000451751
Ensembl peptide - ENSP00000261700
NCBI entrez gene - 51637     See in Manteia.
OMIM - 610858
RefSeq - NM_016039
RefSeq Peptide - NP_057123
swissprot - Q9Y224
swissprot - G3V4C6
swissprot - G3V4E7
swissprot - H0YJB9
swissprot - Q549M8
Ensembl - ENSG00000087302
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rtrafENSDARG00000009253Danio rerio
 C5H14orf166ENSGALG00000012379Gallus gallus
 RtrafENSMUSG00000021807Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019265  RNA transcription, translation and transport factor protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation TAS
 biological_processGO:0006469 negative regulation of protein kinase activity IMP
 biological_processGO:0016032 viral process IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IMP
 biological_processGO:0050658 RNA transport TAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 cellular_componentGO:0072669 tRNA-splicing ligase complex IDA
 cellular_componentGO:0072686 mitotic spindle IDA
 molecular_functionGO:0000993 RNA polymerase II core binding IDA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042802 identical protein binding IPI


Pathways (from Reactome)
Pathway description
tRNA processing in the nucleus


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr