ENSMUSG00000021807


Mus musculus

Features
Gene ID: ENSMUSG00000021807
  
Biological name :Rtraf
  
Synonyms : Q9CQE8 / RNA transcription, translation and transport factor / Rtraf
  
Possible biological names infered from orthology : Q9Y224
  
Species: Mus musculus
  
Chr. number: 14
Strand: -1
Band: A3
Gene start: 19811351
Gene end: 19823824
  
Corresponding Affymetrix probe sets: 10417778 (MoGene1.0st)   10499425 (MoGene1.0st)   1435413_x_at (Mouse Genome 430 2.0 Array)   1437450_x_at (Mouse Genome 430 2.0 Array)   1448238_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000022341
NCBI entrez gene - 68045     See in Manteia.
MGI - MGI:1915295
RefSeq - NM_026528
RefSeq Peptide - NP_080804
swissprot - Q4VA29
swissprot - Q9CQE8
Ensembl - ENSMUSG00000021807
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rtrafENSDARG00000009253Danio rerio
 C5H14orf166ENSGALG00000012379Gallus gallus
 RTRAFENSG00000087302Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019265  RNA transcription, translation and transport factor protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation ISO
 biological_processGO:0006469 negative regulation of protein kinase activity IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm ISS
 cellular_componentGO:0072669 tRNA-splicing ligase complex ISO
 cellular_componentGO:0072686 mitotic spindle IEA
 molecular_functionGO:0000993 RNA polymerase II core binding ISO
 molecular_functionGO:0003723 RNA binding ISO
 molecular_functionGO:0042802 identical protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000745 tremors "repetitive, cyclical movements of the body or a body part; usually involuntary, but can also manifest in response to an attempt at movement" [MeSH:National Library of Medicine - Medical Subject Headings , 2003, Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
Show

Allelic Composition: C1ql3tm1.2Sud/C1ql3+
Genetic Background: involves: 129S6/SvEvTac * BALB/cJ * C57BL/6 * SJL

 MP:0001402 hypoactivity "reduced movement from one place to another" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, csmith:Cynthia L. Smith , Mouse Genome Informatics Curator, J:64289]
Show

Allelic Composition: C1ql3tm1.2Sud/C1ql3+
Genetic Background: involves: 129S6/SvEvTac * BALB/cJ * C57BL/6 * SJL

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr