ENSG00000089289


Homo sapiens

Features
Gene ID: ENSG00000089289
  
Biological name :IGBP1
  
Synonyms : IGBP1 / immunoglobulin binding protein 1 / P78318
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: 1
Band: q13.1
Gene start: 70133449
Gene end: 70166324
  
Corresponding Affymetrix probe sets: 202105_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000348784
Ensembl peptide - ENSP00000363661
NCBI entrez gene - 3476     See in Manteia.
OMIM - 300139
RefSeq - XM_017029489
RefSeq - NM_001551
RefSeq Peptide - NP_001542
swissprot - P78318
Ensembl - ENSG00000089289
  
Related genetic diseases (OMIM): 300472 - Corpus callosum, agenesis of, with mental retardation, ocular coloboma and micrognathia, 300472
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 igbp1ENSDARG00000002184Danio rerio
 Igbp1ENSMUSG00000031221Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AC011195.2ENSG0000026682686


Protein motifs (from Interpro)
Interpro ID Name
 IPR007304  TAP46-like protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IMP
 biological_processGO:0007165 signal transduction NAS
 biological_processGO:0009966 regulation of signal transduction IEA
 biological_processGO:0032873 negative regulation of stress-activated MAPK cascade IMP
 biological_processGO:0034612 response to tumor necrosis factor IMP
 biological_processGO:0035303 regulation of dephosphorylation IBA
 biological_processGO:0042113 B cell activation IEA
 biological_processGO:0043154 negative regulation of cysteine-type endopeptidase activity involved in apoptotic process IMP
 biological_processGO:0043666 regulation of phosphoprotein phosphatase activity IEA
 biological_processGO:0060632 regulation of microtubule-based movement IMP
 biological_processGO:0070555 response to interleukin-1 IMP
 cellular_componentGO:0005737 cytoplasm NAS
 cellular_componentGO:0005829 cytosol IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019888 protein phosphatase regulator activity IDA
 molecular_functionGO:0051721 protein phosphatase 2A binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000278 Retrognathia 
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 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000378 Cup-shaped ears "Small auricles that grow forward over the meatus (ear canal)." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000426 Prominent nasal bridge 
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 HP:0000453 Choanal atresia "Absence or abnormal closure of the choana (the posterior nasal aperture)." [HPO:curators]
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 HP:0000470 Short neck 
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 HP:0000475 Broad neck 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000505 Impaired vision 
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 HP:0000588 Optic nerve coloboma 
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 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001419 X-linked recessive inheritance "A mode of inheritance that is observed for recessive traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked recessive disorders manifest in males (who have one copy of the X chromosome and are thus hemizygotes), but generally not in female heterozygotes who have one mutant and one normal allele." [HPO:curators]
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001643 Patent ductus arteriosus 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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