ENSG00000100416


Homo sapiens

Features
Gene ID: ENSG00000100416
  
Biological name :TRMU
  
Synonyms : O75648 / TRMU / tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 22
Strand: 1
Band: q13.31
Gene start: 46330875
Gene end: 46357340
  
Corresponding Affymetrix probe sets: 204317_at (Human Genome U133 Plus 2.0 Array)   213634_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000496496
Ensembl peptide - ENSP00000495331
Ensembl peptide - ENSP00000496641
Ensembl peptide - ENSP00000290846
Ensembl peptide - ENSP00000370407
Ensembl peptide - ENSP00000370409
Ensembl peptide - ENSP00000393014
Ensembl peptide - ENSP00000398488
Ensembl peptide - ENSP00000407700
Ensembl peptide - ENSP00000413880
Ensembl peptide - ENSP00000493778
Ensembl peptide - ENSP00000494255
Ensembl peptide - ENSP00000494679
NCBI entrez gene - 55687     See in Manteia.
OMIM - 610230
RefSeq - XM_011530275
RefSeq - NM_001282782
RefSeq - NM_001282783
RefSeq - NM_001282784
RefSeq - NM_001282785
RefSeq - NM_018006
RefSeq - XM_005261678
RefSeq - XM_005261681
RefSeq - XM_011530271
RefSeq - XM_011530272
RefSeq - XM_011530273
RefSeq - XM_011530274
RefSeq Peptide - NP_001269714
RefSeq Peptide - NP_060476
RefSeq Peptide - NP_001269711
RefSeq Peptide - NP_001269712
RefSeq Peptide - NP_001269713
swissprot - O75648
swissprot - B4DZN5
swissprot - Q2PPL5
Ensembl - ENSG00000100416
  
Related genetic diseases (OMIM): 580000 - {Deafness, mitochondrial, modifier of}, 580000
  613070 - Liver failure, transient infantile, 613070
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trmuENSDARG00000043734Danio rerio
 TRMUENSGALG00000031922Gallus gallus
 TrmuENSMUSG00000022386Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004506  tRNA-specific 2-thiouridylase
 IPR014729  Rossmann-like alpha/beta/alpha sandwich fold
 IPR023382  Adenine nucleotide alpha hydrolase-like domains


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002143 tRNA wobble position uridine thiolation IBA
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0032259 methylation IEA
 biological_processGO:0070903 mitochondrial tRNA thio-modification IBA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005739 mitochondrion IBA
 molecular_functionGO:0000049 tRNA binding IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016783 sulfurtransferase activity IEA


Pathways (from Reactome)
Pathway description
tRNA modification in the mitochondrion


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000952 Jaundice "Yellow pigmentation of the skin or sclera due to bilirubin, which in turn is the result of increased bilirubin concentration in the bloodstream." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001403 Macrovesicular steatosis 
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 HP:0001414 Microvesicular steatosis 
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 HP:0001427 Mitochondrial inheritance "A mode of inheritance that is observed for traits related to a gene encoded on the mitochondrial genome. Because the mitochondrial genome is almost always maternally inherited, a mitochondrial condition can only be transmitted by females, although the condition can affect both sexes. The proportion of mutant mitochondria can vary (heteroplasmy)." [HPO:curators]
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 HP:0002013 Vomiting 
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 HP:0002151 Increased serum lactate "Abnormally increased level of blood lactate (2-hydroxypropanoic acid). Lactate is produced from pyruvate by lactate dehydrogenase during normal metabolism." [HPO:curators]
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002904 Hyperbilirubinemia 
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
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 HP:0003256 Abnormalities of the clotting factors 
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 HP:0003270 Abdominal distention "Enlargement or distention of the abdomen, which can be a secondary feature associated with a number of conditions such as bowel obstruction." [HPO:curators]
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 HP:0006554 Acute hepatic failure "Hepatic failure refers to the inability of the liver to perform its normal synthetic and metabolic functions, which can result in coagulopathy and alteration in the mental status of a previously healthy individual. Hepatic failure is defined as acute if there is onset of encephalopathy within 8 weeks of the onset of symptoms in a patient with a previously healthy liver." [HPO:curators]
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 HP:0008872 Feeding problems in infancy 
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 HP:0011975 Aminoglycoside-induced hearing loss "Partial or complete loss of hearing following ingestion of aminoglycoside antibiotics." [HPO:probinson, pmid:2669624]
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 HP:0200125 Mitochondrial respiratory chain defects 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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