ENSGALG00000031922


Gallus gallus

Features
Gene ID: ENSGALG00000031922
  
Biological name :TRMU
  
Synonyms : Mitochondrial tRNA-specific 2-thiouridylase 1 / Q5ZKW0 / TRMU
  
Possible biological names infered from orthology : O75648 / Q9DAT5 / tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 15721903
Gene end: 15733539
  
Corresponding Affymetrix probe sets: Gga.3303.1.S1_s_at (Chicken Array)   GgaAffx.12077.1.S1_at (Chicken Array)   GgaAffx.8260.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000053750
NCBI entrez gene - 425909     See in Manteia.
RefSeq - NM_001031351
RefSeq Peptide - NP_001026522
swissprot - Q5ZKW0
Ensembl - ENSGALG00000031922
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trmuENSDARG00000043734Danio rerio
 TRMUENSG00000100416Homo sapiens
 TrmuENSMUSG00000022386Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004506  tRNA-specific 2-thiouridylase
 IPR014729  Rossmann-like alpha/beta/alpha sandwich fold
 IPR023382  Adenine nucleotide alpha hydrolase-like domains


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002143 tRNA wobble position uridine thiolation IBA
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0070903 mitochondrial tRNA thio-modification IBA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005739 mitochondrion IBA
 molecular_functionGO:0000049 tRNA binding IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016783 sulfurtransferase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr