ENSG00000104133


Homo sapiens

Features
Gene ID: ENSG00000104133
  
Biological name :SPG11
  
Synonyms : Q96JI7 / SPG11 / SPG11, spatacsin vesicle trafficking associated
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: -1
Band: q21.1
Gene start: 44562696
Gene end: 44663678
  
Corresponding Affymetrix probe sets: 1559747_at (Human Genome U133 Plus 2.0 Array)   203513_at (Human Genome U133 Plus 2.0 Array)   232403_at (Human Genome U133 Plus 2.0 Array)   241920_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000453599
Ensembl peptide - ENSP00000453490
Ensembl peptide - ENSP00000453848
Ensembl peptide - ENSP00000453921
Ensembl peptide - ENSP00000261866
Ensembl peptide - ENSP00000396110
Ensembl peptide - ENSP00000445278
Ensembl peptide - ENSP00000452629
Ensembl peptide - ENSP00000452744
Ensembl peptide - ENSP00000452991
Ensembl peptide - ENSP00000453227
Ensembl peptide - ENSP00000453238
Ensembl peptide - ENSP00000453246
Ensembl peptide - ENSP00000453314
NCBI entrez gene - 80208     See in Manteia.
OMIM - 610844
RefSeq - XM_017022636
RefSeq - NM_001160227
RefSeq - NM_025137
RefSeq - XM_006720700
RefSeq - XM_006720701
RefSeq - XM_017022634
RefSeq - XM_017022635
RefSeq Peptide - NP_001153699
RefSeq Peptide - NP_079413
swissprot - H0YN34
swissprot - H0YN96
swissprot - Q96JI7
swissprot - A0A075B718
swissprot - C4B7M2
swissprot - H0YK24
swissprot - H0YKC1
swissprot - H0YKY8
swissprot - H0YLK0
swissprot - H0YLR8
swissprot - H0YLK7
swissprot - H0YM73
Ensembl - ENSG00000104133
  
Related genetic diseases (OMIM): 602099 - Amyotrophic lateral sclerosis 5, juvenile, 602099
  604360 - Spastic paraplegia 11, autosomal recessive, 604360
  616668 - Charcot-Marie-Tooth disease, axonal, type 2X, 616668
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 spg11ENSDARG00000045968Danio rerio
 SPG11ENSGALG00000008180Gallus gallus
 Spg11ENSMUSG00000033396Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR028103  Spatacsin
 IPR028107  Spatacsin, C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007040 lysosome organization IEA
 biological_processGO:0007268 chemical synaptic transmission IMP
 biological_processGO:0008088 axo-dendritic transport IMP
 biological_processGO:0048489 synaptic vesicle transport IMP
 biological_processGO:0048675 axon extension IEA
 biological_processGO:0090389 phagosome-lysosome fusion involved in apoptotic cell clearance IEA
 biological_processGO:0090659 walking behavior IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005765 lysosomal membrane HDA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IDA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0045202 synapse IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000012 Urinary urgency 
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 HP:0000014 Abnormality of the bladder 
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 HP:0000020 Urinary incontinence "Loss of the ability to control the urinary bladder leading to involuntary urination." [HPO:sdoelken]
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 HP:0000505 Impaired vision 
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 HP:0000608 Macular degeneration 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000640 Gaze-evoked nystagmus "Nystagmus made apparent by looking to the right or to the left." [HPO:curators]
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 HP:0000763 Sensory neuropathy "Peripheral neuropathy affecting primarily the sensory nerves." [HPO:curators]
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 HP:0001152 Saccadic smooth pursuit 
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 HP:0001155 Abnormality of the hand "An abnormality affecting one or both hands." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001258 Spastic paraplegia 
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001268 Mental deterioration 
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001315 Reduced reflexes 
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 HP:0001328 Learning disability 
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001761 Pes cavus 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002061 Lower limb spasticity 
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 HP:0002064 Spastic gait 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002127 Upper motor neuron abnormality 
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 HP:0002166 Decreased vibratory sense in the lower limbs "A decrease in the ability to perceive vibration in the legs." [HPO:curators]
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 HP:0002193 Pseudobulbar behavioral symptoms "Individuals with `Pseudobulbar signs` (HP:0002200) often also demonstrate abnormal behavioral symptoms such as inappropriate emotional outbursts of uncontrolled laughter or weeping etc." [HPO:sdoelken]
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 HP:0002314 Degeneration of the lateral corticospinal tracts 
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 HP:0002366 Lower motor neuron signs 
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 HP:0002380 Fasciculations "Fasciculations are observed as small, local, involuntary muscle contractions (twitching) visible under the skin. Fasciculations result from increased irritability of an axon (which in turn is often a manifestation of disease of a motor neuron). This leads to sporadic discharges of all the muscle fibers controlled by the axon in isolation from other motor units." [HPO:curators]
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0002483 Bulbar signs 
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 HP:0002518 Periventricular white matter changes 
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 HP:0002747 Respiratory insufficiency due to muscle weakness 
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 HP:0002751 Kyphoscoliosis 
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 HP:0002839 Sphincter disturbances (bladder) 
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 HP:0002936 Distal sensory impairment 
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 HP:0003199 Decreased muscle mass 
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 HP:0003380 Decreased number of myelinated fibers "A loss of myelinated nerve fibers (in general, this finding can be observed on nerve biopsy)." [HPO:curators]
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 HP:0003393 Thenar muscle atrophy 
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 HP:0003457 Abnormal EMG findings "Abnormal results of investigations using electromyography (EMG)." [HPO:curators]
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 HP:0003477 Axonal neuropathy 
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003581 Onset in adulthood 
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 HP:0003621 Juvenile onset 
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 HP:0003676 Progressive disorder 
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 HP:0003677 Slow progression 
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 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
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 HP:0003812 Phenotypic variability 
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 HP:0006466 Contractures of the ankles 
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 HP:0007067 Peripheral sensory neuropathy, distal 
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 HP:0007178 Motor polyneuropathy 
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 HP:0007256 Mild pyramidal signs 
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 HP:0007340 Lower limb muscle weakness "Weakness of the muscles of the legs." [HPO:curators]
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 HP:0007354 Amyotrophic lateral sclerosis 
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 HP:0007370 Aplasia/Hypoplasia of the corpus callosum "Absence or underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0009027 Foot dorsiflexor weakness 
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 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
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 HP:0011448 Ankle clonus "Clonus is an involuntary tendon reflex that causes repeated flexion and extension of the foot. Ankle clonus is tested by rapidly flexing the foot upward." [HPO:probinson]
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 HP:0011449 Knee clonus ".Clonus is an involuntary tendon reflex that causes repeated flexion and extension of the foot. Knee clonus can be tested by rapidly pushing the patella towards the toes." [HPO:probinson]
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 HP:0011463 Childhood onset "Onset of disease at the age of between 1 and 5 years." [DDD:hfirth]
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 HP:0030051 Tip-toe gait "An abnormal gait pattern characterized by the failue of the heel to contact the floor at the onset of stance during gait." [pmid:24757457]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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