ENSG00000104973


Homo sapiens

Features
Gene ID: ENSG00000104973
  
Biological name :MED25
  
Synonyms : MED25 / mediator complex subunit 25 / Q71SY5
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: q13.33
Gene start: 49818279
Gene end: 49840383
  
Corresponding Affymetrix probe sets: 1553993_s_at (Human Genome U133 Plus 2.0 Array)   208110_x_at (Human Genome U133 Plus 2.0 Array)   215897_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000470692
Ensembl peptide - ENSP00000478074
Ensembl peptide - ENSP00000484882
Ensembl peptide - ENSP00000482659
Ensembl peptide - ENSP00000482155
Ensembl peptide - ENSP00000480731
Ensembl peptide - ENSP00000479851
Ensembl peptide - ENSP00000326767
Ensembl peptide - ENSP00000437496
Ensembl peptide - ENSP00000470027
NCBI entrez gene - 81857     See in Manteia.
OMIM - 610197
RefSeq - NM_030973
RefSeq - XM_011527353
RefSeq Peptide - NP_112235
swissprot - A0A087WW16
swissprot - A0A087WTR5
swissprot - B9TX33
swissprot - M0QZQ2
swissprot - Q71SY5
swissprot - M0QYR4
swissprot - B9TX31
swissprot - A0A087WYW9
Ensembl - ENSG00000104973
  
Related genetic diseases (OMIM): 605589 - ?Charcot-Marie-Tooth disease, type 2B2, 605589
  616449 - Basel-Vanagait-Smirin-Yosef syndrome, 616449
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Med25ENSMUSG00000002968Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PTOV1 / Q86YD1 / prostate tumor overexpressed 1ENSG0000010496022


Protein motifs (from Interpro)
Interpro ID Name
 IPR021394  Mediator complex, subunit Med25, PTOV domain
 IPR021397  Mediator complex, subunit Med25, synapsin 1
 IPR021406  Mediator complex, subunit Med25, NR box
 IPR021419  Mediator complex, subunit Med25, von Willebrand factor type A
 IPR036465  von Willebrand factor A-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IMP
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter TAS
 biological_processGO:0035563 positive regulation of chromatin binding IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0048147 negative regulation of fibroblast proliferation IMP
 biological_processGO:0071158 positive regulation of cell cycle arrest IMP
 biological_processGO:2001178 positive regulation of mediator complex assembly IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0044798 nuclear transcription factor complex IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IPI
 molecular_functionGO:0042974 retinoic acid receptor binding IPI
 molecular_functionGO:0046965 retinoid X receptor binding IPI


Pathways (from Reactome)
Pathway description
PPARA activates gene expression
Generic Transcription Pathway
Transcriptional regulation of white adipocyte differentiation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000126 Hydronephrosis 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000232 Everted lower lip 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000322 Short philtrum 
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 HP:0000482 Microcornea "A congenital abnormality of the `cornea` (FMA:58238) in which the cornea and the anterior segment of the eye are smaller than normal. The horizontal diameter of the cornea does not reach 10 mm even in adulthood." [HPO:probinson]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001284 Areflexia 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001671 Abnormality of the cardiac septa 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0002936 Distal sensory impairment 
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 HP:0003431 Decreased motor nerve conduction velocity (NCV) 
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 HP:0003577 Onset at birth 
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 HP:0003581 Onset in adulthood 
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 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
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 HP:0008070 Sparse hair 
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 HP:0010804 Tented upper lip vermilion "Triangular appearance of the oral aperture with the apex in the midpoint of the upper vermilion and the lower vermilion forming the base." [pmid:19125428]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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