ENSG00000105983


Homo sapiens

Features
Gene ID: ENSG00000105983
  
Biological name :LMBR1
  
Synonyms : limb development membrane protein 1 / LMBR1 / Q8WVP7
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: q36.3
Gene start: 156668946
Gene end: 156893230
  
Corresponding Affymetrix probe sets: 222505_at (Human Genome U133 Plus 2.0 Array)   222506_at (Human Genome U133 Plus 2.0 Array)   224036_s_at (Human Genome U133 Plus 2.0 Array)   224410_s_at (Human Genome U133 Plus 2.0 Array)   236357_at (Human Genome U133 Plus 2.0 Array)   242035_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000414795
Ensembl peptide - ENSP00000413539
Ensembl peptide - ENSP00000492304
Ensembl peptide - ENSP00000326604
Ensembl peptide - ENSP00000352392
Ensembl peptide - ENSP00000392557
Ensembl peptide - ENSP00000393928
Ensembl peptide - ENSP00000395754
Ensembl peptide - ENSP00000397698
Ensembl peptide - ENSP00000403052
Ensembl peptide - ENSP00000408256
NCBI entrez gene - 64327     See in Manteia.
OMIM - 605522
RefSeq - XM_017012518
RefSeq - NM_022458
RefSeq - XM_005249555
RefSeq - XM_005249558
RefSeq - XM_017012507
RefSeq - XM_017012508
RefSeq - XM_017012509
RefSeq - XM_017012510
RefSeq - XM_017012511
RefSeq - XM_017012512
RefSeq - XM_017012513
RefSeq - XM_017012514
RefSeq - XM_017012515
RefSeq - XM_017012516
RefSeq - XM_017012517
RefSeq - NM_001350957
RefSeq Peptide - NP_001337887
RefSeq Peptide - NP_071903
RefSeq Peptide - NP_001337886
swissprot - F8WDW0
swissprot - F8WEK4
swissprot - F8WEN8
swissprot - H0Y6V6
swissprot - H7C1Y4
swissprot - Q8WVP7
swissprot - A0A1W2PQV9
swissprot - F2Z2Z3
swissprot - Q8NDP7
swissprot - F8WB14
swissprot - F8WCL1
Ensembl - ENSG00000105983
  
Related genetic diseases (OMIM): 200500 - Acheiropody, 200500
  188740 - Hypoplastic or aplastic tibia with polydactyly, 188740
  135750 - Laurin-Sandrow syndrome, 135750
  174500 - Polydactyly, preaxial type II, 174500
  186200 - Syndactyly, type IV, 186200
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lmbr1ENSDARG00000024092Danio rerio
 LMBR1ENSGALG00000030379Gallus gallus
 Lmbr1ENSMUSG00000010721Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LMBR1L / Q6UX01 / limb development membrane protein 1 likeENSG0000013963658


Protein motifs (from Interpro)
Interpro ID Name
 IPR006876  LMBR1-like membrane protein
 IPR008075  Lipocalin-interacting membrane receptor


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0042733 embryonic digit morphogenesis IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000238 Hydrocephalus 
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 HP:0000271 Abnormality of the face 
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 HP:0000316 Hypertelorism 
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 HP:0000430 Hypoplastic nasal alae "Thinned, deficient, or excessively arched `ala nasi` (FMA:59519)." [pmid:19152422]
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 HP:0000437 Flat nasal tip 
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 HP:0000448 Prominent nose 
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 HP:0000457 Flat nose 
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0001159 Syndactyly "Webbing or fusion of the fingers or toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers or toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001161 Polydactyly (hands) 
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 HP:0001162 Postaxial polydactyly (hands) "Supernumerary digits located at the ulnar side of the hand." [HPO:curators]
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 HP:0001163 Abnormality of the metacarpal bones 
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 HP:0001177 Preaxial polydactyly (hands) "Supernumerary digits located at the radial side of the hand. Polydactyly (supernumerary digits) involving the thumb occurs in many distinct forms of high variability and severity. Ranging from fleshy nubbins over varying degrees of partial duplication/splitting to completely duplicated or even triplicated thumbs or preaxial (on the radial side of the hand) supernumerary digits." [HPO:curators]
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 HP:0001199 Triphalangeal thumb "In contrast to the metacarpals 2-5, the first metacarpal is embryologically of phalangeal origin. The thumb normally consists of the first metacarpal and a proximal and distal phalanx. All other digits have an additional middle phalanx. This term applies if the thumb has an accessory phalanx, leading to a digit like appearance of the thumb." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001376 Decreased mobility of joints 
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 HP:0001501 6 metacarpals 
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 HP:0001627 Cardiac abnormality "An abnormality of the `heart` (FMA:7088)." [HPO:probinson]
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 HP:0001769 Broad feet "Increased width of the feet." [HPO:curators]
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 HP:0001770 Toe syndactyly "Webbing or fusion of the toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0001829 Polydactyly (feet) 
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 HP:0001830 Postaxial polydactyly (feet) "Polydactyly of the foot most commonly refers to the presence of six toes on one foot. Postaxial polydactyly affects the lateral ray and the duplication may range from a well-formed articulated digit to a rudimentary digit." [HPO:curators]
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 HP:0001841 Preaxial polydactyly (feet) "This term applies for a wide variety of partial and/or complete duplications of the phalanges of the big toe (sometimes including the 1st metatarsal). A partial duplication can present itself on x-rays as a notched phalanx, bifid phalanx or a broadened phalanx. Polydactyly affecting the big toe is called preaxial or hallucal polydactyly of the feet." [HPO:curators]
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 HP:0001883 Talipes 
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 HP:0002000 Columella, short "Reduced distance from the anterior border of the naris to the subnasale." [pmid:19152422]
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 HP:0002714 Downturned corners of mouth "A morphological `abnormality of the mouth` (HP:0000153) in which the `angle of the mouth` (FMA:77269) is downturned." [HPO:probinson]
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 HP:0002990 Fibular aplasia "Absence of the fibula." [HPO:curators]
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 HP:0003019 Abnormality of the wrist "Abnormalitly of the wrist, the structure connecting the hand and the forearm." [HPO:curators]
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 HP:0003974 Absent ossification/absence of radius 
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 HP:0003982 Absent ossification/absent ulna 
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 HP:0004050 Absent hands 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004231 Absent carpal bones/absent ossification of the carpal bones 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004691 2-3 toe syndactyly "`Syndactyly` (HP:0001159) with fusion of toes two and three." [HPO:sdoelken]
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 HP:0005632 Absent forearm 
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 HP:0005736 Hypoplastic tibia 
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 HP:0005792 Humeral hypoplasia 
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 HP:0005866 Opposable triphalangeal thumbs 
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 HP:0005917 Supernumerary metacarpal bones "The presence of more than the normal number of metacarpal bones." [HPO:curators]
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 HP:0005930 Abnormality of the epiphyses 
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 HP:0006088 1-5 finger complete cutaneous syndactyly 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0006443 Patellar aplasia "Absence of the patella." [HPO:curators]
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 HP:0006487 Bowing of the long bones 
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 HP:0007370 Aplasia/Hypoplasia of the corpus callosum "Absence or underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0008368 Synostosis involving tarsal bones 
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 HP:0009556 Aplasia of the tibia "Absence of the tibia." [HPO:curators]
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 HP:0009601 Aplasia/Hypoplasia of the thumb "Hypoplastic/small or absent thumb." [HPO:curators]
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 HP:0009606 duplicated distal phalanx of the thumb "Complete duplication of the distal phalanx of the thumb. On x-ray two separate bones appear side to side." [HPO:curators]
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 HP:0009802 Aplasia of the phalanges of the hand "Absence of one or more of the phalanges of the hand." [HPO:curators]
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 HP:0009813 Phocomelia involving the upper limbs "Missing or malformed long bones of the upper limbs with the distal parts (the hands) connected to the variably shortened or even absent upper extremity, leading to a flipper-like appearance, as opposed to other forms of limb malformations were either the whole limb is missing (such as amelia), or the distal part of a limb is absent (peromelia)." [HPO:curators]
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 HP:0009820 Peromelia involving the lower limbs "`Peromelia` HP:0009828) affecting only the lower limbs." [HPO:sdoelken]
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 HP:0010048 Aplasia of metacarpal bones 
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 HP:0010066 Partial/complete duplication of the phalanges of the hallux 
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 HP:0010442 Polydactyly 
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 HP:0010503 Fibular duplication "Duplication of the fibula. This may occur as a part of diplopodia (accessory tarsal or metatarsal bone). Diplopodia with double fibula is an extremely rare condition." [HPO:curators]
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 HP:0010509 Aplasia of the tarsal bones "Absence of the tarsal bones." [HPO:curators]
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 HP:0010689 Mirror image dupliction of digits "A mirror-like duplication of the digits of the hands or feet leading to an appearance were radio/ulnar and/or fibular/tibial aspects of the hands and/or feet can not be destinguished anymore. Depending on severity this might also affect the bones of the forarm or lower leg in such a way that there might be two ulnae rather than one radius and ulna each. The same may be seen for the fibula and tibia." [HPO:sdoelken]
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 HP:0010708 1-5 finger syndactyly "`Syndactyly` (HP:0001159) with fusion of fingers one to five (complete syndactyly of all fingers of the hand)." [HPO:sdoelken]
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 HP:0010744 Aplasia of the metatarsal bones 
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 HP:0010760 Aplasia of the toes 
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 HP:0012107 Increased fibular diameter "Increased width of the cross sectional diameter of the fibula." [HPO:probinson, MP:0008159]
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0100524 Limb duplication 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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