ENSG00000108588


Homo sapiens

Features
Gene ID: ENSG00000108588
  
Biological name :CCDC47
  
Synonyms : CCDC47 / coiled-coil domain containing 47 / Q96A33
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: -1
Band: q23.3
Gene start: 63745250
Gene end: 63776351
  
Corresponding Affymetrix probe sets: 217814_at (Human Genome U133 Plus 2.0 Array)   222432_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000463577
Ensembl peptide - ENSP00000482148
Ensembl peptide - ENSP00000225726
Ensembl peptide - ENSP00000384888
Ensembl peptide - ENSP00000462202
NCBI entrez gene - 57003     See in Manteia.
RefSeq - NM_020198
RefSeq - XM_005257527
RefSeq Peptide - NP_064583
swissprot - A0A087WYW6
swissprot - J3KRX4
swissprot - Q96A33
Ensembl - ENSG00000108588
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ccdc47ENSDARG00000054362Danio rerio
 CCDC47ENSGALG00000000564Gallus gallus
 Ccdc47ENSMUSG00000078622Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AC046185.1ENSG0000012569511


Protein motifs (from Interpro)
Interpro ID Name
 IPR012879  Protein of unknown function DUF1682


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001649 osteoblast differentiation HDA
 biological_processGO:0006983 ER overload response IEA
 biological_processGO:0007029 endoplasmic reticulum organization IEA
 biological_processGO:0009791 post-embryonic development IEA
 biological_processGO:0030433 ubiquitin-dependent ERAD pathway IEA
 biological_processGO:0055074 calcium ion homeostasis IEA
 cellular_componentGO:0005783 endoplasmic reticulum IDA
 cellular_componentGO:0005791 rough endoplasmic reticulum IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005509 calcium ion binding IBA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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