ENSMUSG00000078622


Mus musculus

Features
Gene ID: ENSMUSG00000078622
  
Biological name :Ccdc47
  
Synonyms : Ccdc47 / Coiled-coil domain-containing protein 47 / Q9D024
  
Possible biological names infered from orthology : coiled-coil domain containing 47 / Q96A33
  
Species: Mus musculus
  
Chr. number: 11
Strand: -1
Band: E1
Gene start: 106197408
Gene end: 106216344
  
Corresponding Affymetrix probe sets: 10392087 (MoGene1.0st)   1424636_at (Mouse Genome 430 2.0 Array)   1424637_s_at (Mouse Genome 430 2.0 Array)   1442525_at (Mouse Genome 430 2.0 Array)   1451420_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000122736
Ensembl peptide - ENSMUSP00000002043
Ensembl peptide - ENSMUSP00000102478
Ensembl peptide - ENSMUSP00000117127
NCBI entrez gene - 67163     See in Manteia.
MGI - MGI:1914413
RefSeq - NM_026009
RefSeq Peptide - NP_080285
swissprot - Q9D024
swissprot - B1AR93
swissprot - F7C265
swissprot - Q0VBU4
Ensembl - ENSMUSG00000078622
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ccdc47ENSDARG00000054362Danio rerio
 CCDC47ENSGALG00000000564Gallus gallus
 CCDC47ENSG00000108588Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR012879  Protein of unknown function DUF1682


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006983 ER overload response IMP
 biological_processGO:0007029 endoplasmic reticulum organization IMP
 biological_processGO:0009791 post-embryonic development IMP
 biological_processGO:0030433 ubiquitin-dependent ERAD pathway IMP
 biological_processGO:0055074 calcium ion homeostasis IMP
 cellular_componentGO:0005783 endoplasmic reticulum ISO
 cellular_componentGO:0005791 rough endoplasmic reticulum IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0005621 abnormal cell physiology "aberration in the vital processes of the cell " [Stedman s Medical Dictionary:ISBN 0-683-40008-8, hdene:Howard Dene , Mouse Genome Informatics Curator]
Show

Allelic Composition: Hps3coa-8J/Hps3coa-8J
Genetic Background: C57BL/6J-Hps3coa-8J/GrsrJ

 MP:0011087 complete neonatal lethality "death of all organisms of a given genotype in a population within the neonatal period after birth (Mus: P0)" [MGI:csmith]
Show

Allelic Composition: Hps3coa-8J/Hps3coa-8J
Genetic Background: C57BL/6J-Hps3coa-8J/GrsrJ

 MP:0011101 partial prenatal lethality "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms between fertilization and birth (Mus: approximately E18.5)" [MGI:csmith]
Show

Allelic Composition: Hps3coa-8J/Hps3coa-8J
Genetic Background: C57BL/6J-Hps3coa-8J/GrsrJ

 MP:0013501 increased fibroblast apoptosis "increase in the timing or the number of fibroblast cells undergoing programmed cell death" [MGI:csmith]
Show

Allelic Composition: Hps3coa-8J/Hps3coa-8J
Genetic Background: C57BL/6J-Hps3coa-8J/GrsrJ

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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