ENSG00000108950


Homo sapiens

Features
Gene ID: ENSG00000108950
  
Biological name :FAM20A
  
Synonyms : FAM20A / FAM20A, golgi associated secretory pathway pseudokinase / Q96MK3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: -1
Band: q24.2
Gene start: 68535113
Gene end: 68601389
  
Corresponding Affymetrix probe sets: 226804_at (Human Genome U133 Plus 2.0 Array)   241981_at (Human Genome U133 Plus 2.0 Array)   242945_at (Human Genome U133 Plus 2.0 Array)   243221_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000464910
Ensembl peptide - ENSP00000467884
Ensembl peptide - ENSP00000468308
Ensembl peptide - ENSP00000481085
NCBI entrez gene - 54757     See in Manteia.
OMIM - 611062
RefSeq - XM_006721959
RefSeq - NM_001243746
RefSeq - NM_017565
RefSeq Peptide - NP_060035
RefSeq Peptide - NP_001230675
swissprot - L8B8N7
swissprot - Q96MK3
swissprot - Q71MG5
swissprot - K7EQL5
swissprot - K7EIV7
Ensembl - ENSG00000108950
  
Related genetic diseases (OMIM): 204690 - Amelogenesis imperfecta, type IG (enamel-renal syndrome), 204690
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 fam20aENSDARG00000079486Danio rerio
 FAM20AENSGALG00000040655Gallus gallus
 Fam20aENSMUSG00000020614Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
FAM20C / Q8IXL6 / FAM20C, golgi associated secretory pathway kinaseENSG0000017770644
FAM20B / O75063 / FAM20B, glycosaminoglycan xylosylkinaseENSG0000011619928


Protein motifs (from Interpro)
Interpro ID Name
 IPR009581  FAM20, C-terminal
 IPR024869  FAM20


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001934 positive regulation of protein phosphorylation IEA
 biological_processGO:0031214 biomineral tissue development IMP
 biological_processGO:0044691 tooth eruption IMP
 biological_processGO:0055074 calcium ion homeostasis IMP
 biological_processGO:0070166 enamel mineralization IMP
 biological_processGO:0071902 positive regulation of protein serine/threonine kinase activity IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005623 cell ISS
 cellular_componentGO:0005783 endoplasmic reticulum ISS
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043539 protein serine/threonine kinase activator activity IDA


Pathways (from Reactome)
Pathway description
Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
Post-translational protein phosphorylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000103 Polyuria 
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 HP:0000112 Nephropathy "A nonspecific term referring to disease or damage of the kidneys." [HPO:curators]
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 HP:0000121 Nephrocalcinosis 
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 HP:0000169 Gingival fibromatosis "Gingival fibromatosis is characterized by a slowly progressive benign enlargement of the oral gingival tissues. The condition results in the teeth being partially or totally engulfed by keratinized gingiva, causing aesthetic and functional problems. Both genetic and pharmacologically induced forms of gingival fibromatosis are known. The most common genetic form, hereditary gingival fibromatosis (HGF), is usually transmitted as an autosomal dominant trait, although sporadic cases are common and autosomal recessive inheritance has been reported." [HPO:curators]
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 HP:0000212 Gingival hyperplasia 
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 HP:0000574 Thick eyebrows 
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 HP:0000684 Delayed dentition "Delayed eruption of teeth." [HPO:curators]
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 HP:0000696 Delayed eruption of secondary teeth 
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 HP:0000705 Amelogenesis imperfecta 
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 HP:0000805 Enuresis "Lack of the ability to control the urinary bladder leading to involuntary urination at an age where control of the bladder should already be possible." [HPO:sdoelken]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001482 Subcutaneous nodules 
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 HP:0001548 Overgrowth 
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 HP:0003771 Pulp stones 
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 HP:0004727 impaired renal concentrating ability 
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 HP:0006286 Yellow-brown discoloration of the teeth 
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 HP:0006302 Dagger-shaped pulp calcifications 
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 HP:0100530 Abnormality of calcium-phosphate metabolism 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000177706 FAM20C / Q8IXL6 / FAM20C, golgi associated secretory pathway kinase  / complex






 

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