ENSG00000109906


Homo sapiens

Features
Gene ID: ENSG00000109906
  
Biological name :ZBTB16
  
Synonyms : Q05516 / ZBTB16 / zinc finger and BTB domain containing 16
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: 1
Band: q23.2
Gene start: 114059593
Gene end: 114250676
  
Corresponding Affymetrix probe sets: 205883_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000338157
Ensembl peptide - ENSP00000437716
Ensembl peptide - ENSP00000443013
Ensembl peptide - ENSP00000445047
Ensembl peptide - ENSP00000376721
NCBI entrez gene - 7704     See in Manteia.
OMIM - 176797
RefSeq - XM_017018259
RefSeq - NM_001018011
RefSeq - NM_006006
RefSeq - XM_017018257
RefSeq - XM_017018258
RefSeq Peptide - NP_001018011
RefSeq Peptide - NP_001341679
RefSeq Peptide - NP_001341680
RefSeq Peptide - NP_005997
swissprot - A0A024R3C6
swissprot - Q05516
swissprot - F5H5Y7
swissprot - F5H6C3
swissprot - H0YGW2
Ensembl - ENSG00000109906
  
Related genetic diseases (OMIM): 176797 - Leukemia, acute promyelocytic, PL2F/RARA type
  612447 - Skeletal defects, genital hypoplasia, and mental retardation, 612447

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 zbtb16aENSDARG00000007184Danio rerio
 zbtb16bENSDARG00000074526Danio rerio
 ZBTB32ENSGALG00000038540Gallus gallus
 Zbtb16ENSMUSG00000066687Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O15060 / ZBTB39 / zinc finger and BTB domain containing 39ENSG0000016686023
Q9Y2Y4 / ZBTB32 / zinc finger and BTB domain containing 32ENSG0000001159021


Protein motifs (from Interpro)
Interpro ID Name
 IPR000210  BTB/POZ domain
 IPR011333  SKP1/BTB/POZ domain superfamily
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IDA
 biological_processGO:0001501 skeletal system development IEA
 biological_processGO:0001823 mesonephros development ISS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006915 apoptotic process NAS
 biological_processGO:0007417 central nervous system development ISS
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0009880 embryonic pattern specification IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0030097 hemopoiesis TAS
 biological_processGO:0030099 myeloid cell differentiation TAS
 biological_processGO:0032332 positive regulation of chondrocyte differentiation IMP
 biological_processGO:0034504 protein localization to nucleus IEA
 biological_processGO:0035116 embryonic hindlimb morphogenesis IEA
 biological_processGO:0035136 forelimb morphogenesis IEA
 biological_processGO:0035137 hindlimb morphogenesis IEA
 biological_processGO:0042733 embryonic digit morphogenesis IEA
 biological_processGO:0043065 positive regulation of apoptotic process IEA
 biological_processGO:0043687 post-translational protein modification TAS
 biological_processGO:0045600 positive regulation of fat cell differentiation IMP
 biological_processGO:0045638 negative regulation of myeloid cell differentiation ISS
 biological_processGO:0045778 positive regulation of ossification IDA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 biological_processGO:0048133 male germ-line stem cell asymmetric division IEA
 biological_processGO:0051138 positive regulation of NK T cell differentiation IEA
 biological_processGO:0051216 cartilage development IDA
 biological_processGO:0061036 positive regulation of cartilage development IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016604 nuclear body IDA
 cellular_componentGO:0016605 PML body IDA
 cellular_componentGO:0016607 nuclear speck IDA
 cellular_componentGO:0017053 transcriptional repressor complex IDA
 cellular_componentGO:0032991 protein-containing complex IMP
 molecular_functionGO:0000980 RNA polymerase II distal enhancer sequence-specific DNA binding IDA
 molecular_functionGO:0001206 transcriptional repressor activity, RNA polymerase II distal enhancer sequence-specific binding IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IDA
 molecular_functionGO:0003690 double-stranded DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008022 protein C-terminus binding IEA
 molecular_functionGO:0019904 protein domain specific binding IEA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Neddylation
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000054 Micropenis 
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000233 Thin vermillion border 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0003022 Hypoplasia of the ulna "Underdevelopment of the ulna." [HPO:curators]
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 HP:0003038 Fibular hypoplasia "Underdevelopment of the fibula." [HPO:curators]
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 HP:0003097 Short femur "An abnormal shortening of the thigh bones." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005736 Hypoplastic tibia 
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 HP:0005815 Supernumerary ribs 
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 HP:0006501 Aplasia/Hypoplasia of the radius "A small/hypoplastic or absent/aplastic radius." [HPO:curators]
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 HP:0009777 Aplasia of the thumb "Absent thumb." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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