ENSG00000112320


Homo sapiens

Features
Gene ID: ENSG00000112320
  
Biological name :SOBP
  
Synonyms : A7XYQ1 / sine oculis binding protein homolog / SOBP
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: q21
Gene start: 107489958
Gene end: 107660167
  
Corresponding Affymetrix probe sets: 1563906_at (Human Genome U133 Plus 2.0 Array)   1569351_at (Human Genome U133 Plus 2.0 Array)   218974_at (Human Genome U133 Plus 2.0 Array)   229034_at (Human Genome U133 Plus 2.0 Array)   229646_at (Human Genome U133 Plus 2.0 Array)   233766_at (Human Genome U133 Plus 2.0 Array)   234098_at (Human Genome U133 Plus 2.0 Array)   244279_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000318900
Ensembl peptide - ENSP00000478366
NCBI entrez gene - 55084     See in Manteia.
OMIM - 613667
RefSeq - XM_011535921
RefSeq - XM_005267041
RefSeq - XM_005267042
RefSeq - XM_011535920
RefSeq - NM_018013
RefSeq Peptide - NP_060483
swissprot - A7XYQ1
swissprot - A0A0C4DGT7
Ensembl - ENSG00000112320
  
Related genetic diseases (OMIM): 613671 - Mental retardation, anterior maxillary protrusion, and strabismus, 613671
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sobpaENSDARG00000054253Danio rerio
 SOBPENSGALG00000043047Gallus gallus
 SobpENSMUSG00000038248Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR026092  Retinoic acid-induced protein 2/sine oculis-binding protein homologue


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007605 sensory perception of sound IEA
 biological_processGO:0007626 locomotory behavior IEA
 biological_processGO:0042472 inner ear morphogenesis IEA
 biological_processGO:0050890 cognition IMP
 biological_processGO:0090102 cochlea development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0032184 SUMO polymer binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000540 Hypermetropia 
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 HP:0000565 Esotropia 
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 HP:0000646 Amblyopia "Reduced visual acuity that is uncorrectable by lenses in the absence of detectable anatomic defects in the eye or visual pathways. Ambylopia can result from visual deprivation during the critical period of development of visual abilities which lasts to about the age of 8 years. Thus, ambylopia can result from strabismus, anisometropia, or high hypermetropia in there is a failure to form a focused image in one or both eyes." [HPO:curators]
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 HP:0000709 Psychosis "A condition characterized by changes of personality and thought patterns often accompanied by hallucinations and delusional beliefs." [HPO:curators]
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 HP:0000736 Short attention span "Reduced attention span characterized by distractibility and impulsivity but not necessarily satisfying the diagnostic criteria for attention deficit hyperactivity disorder." [HPO:curators]
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 HP:0000750 Impaired language development 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0002465 Poor speech 
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 HP:0010807 Open bite "Visible space between the dental arches in occlusion." [pmid:19125428]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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