ENSG00000115665


Homo sapiens

Features
Gene ID: ENSG00000115665
  
Biological name :SLC5A7
  
Synonyms : Q9GZV3 / SLC5A7 / solute carrier family 5 member 7
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q12.3
Gene start: 107986523
Gene end: 108013994
  
Corresponding Affymetrix probe sets: 220722_s_at (Human Genome U133 Plus 2.0 Array)   222967_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000264047
Ensembl peptide - ENSP00000387346
NCBI entrez gene - 60482     See in Manteia.
OMIM - 608761
RefSeq - NM_021815
RefSeq - XM_017004629
RefSeq - NM_001305005
RefSeq - NM_001305006
RefSeq - NM_001305007
RefSeq - XM_011511580
RefSeq - XM_017004628
RefSeq Peptide - NP_068587
RefSeq Peptide - NP_001291934
RefSeq Peptide - NP_001291935
RefSeq Peptide - NP_001291936
swissprot - Q9GZV3
Ensembl - ENSG00000115665
  
Related genetic diseases (OMIM): 158580 - Neuronopathy, distal hereditary motor, type VIIA, 158580
  617143 - Myasthenic syndrome, congenital, 20, presynaptic, 617143
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FQ377903.2ENSDARG00000102336Danio rerio
 slc5a7aENSDARG00000074860Danio rerio
 SLC5A7ENSGALG00000016804Gallus gallus
 Q8BGY9ENSMUSG00000023945Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001734  Sodium/solute symporter


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006814 sodium ion transport IEA
 biological_processGO:0007269 neurotransmitter secretion TAS
 biological_processGO:0007271 synaptic transmission, cholinergic IEA
 biological_processGO:0007274 neuromuscular synaptic transmission IEA
 biological_processGO:0008292 acetylcholine biosynthetic process IEA
 biological_processGO:0015871 choline transport IEA
 biological_processGO:0042136 neurotransmitter biosynthetic process IEA
 biological_processGO:0055085 transmembrane transport TAS
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030424 axon IBA
 cellular_componentGO:0030425 dendrite IBA
 cellular_componentGO:0031594 neuromuscular junction IDA
 cellular_componentGO:0043025 neuronal cell body IEA
 cellular_componentGO:0043204 perikaryon IBA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0098793 presynapse IEA
 molecular_functionGO:0005307 choline:sodium symporter activity IMP
 molecular_functionGO:0015220 choline transmembrane transporter activity IEA
 molecular_functionGO:0015293 symporter activity IEA
 molecular_functionGO:0022857 transmembrane transporter activity IEA
 molecular_functionGO:0033265 choline binding IEA


Pathways (from Reactome)
Pathway description
Acetylcholine Neurotransmitter Release Cycle
Transport of bile salts and organic acids, metal ions and amine compounds
Defective SLC5A7 causes distal hereditary motor neuronopathy 7A (HMN7A)
Defective SLC5A7 causes distal hereditary motor neuronopathy 7A (HMN7A)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000467 Neck muscle weakness 
Show

 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
Show

 HP:0000597 Ophthalmoparesis "Ophthalmoplegia is a paralysis or weakness of one or more of the muscles that control eye movement." [HPO:curators]
Show

 HP:0001265 Hyporeflexia 
Show

 HP:0001283 Bulbar palsy "Bulbar weakness (or bulbar palsy) refers to bilateral impairment of function of the lower cranial nerves IX, X, XI and XII, which occurs due to lower motor neuron lesion either at nuclear or fascicular level in the medulla or from bilateral lesions of the lower cranial nerves outside the brain-stem. Bulbar weakness is often associated with difficulty in chewing, weakness of the facial muscles, dysarthria, palatal weakness and regurgitation of fluids, dysphagia, and dysphonia." [HPO:curators]
Show

 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
Show

 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
Show

 HP:0001561 Polyhydramnios 
Show

 HP:0001604 Vocal cord paresis 
Show

 HP:0001605 Vocal cord paralysis 
Show

 HP:0001618 Dysphonia 
Show

 HP:0001761 Pes cavus 
Show

 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
Show

 HP:0002033 Poor suck "An inadequate sucking reflex, resulting in the difficult of newborns to be breast-fed." [HPO:curators]
Show

 HP:0002355 Difficulty walking 
Show

 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
Show

 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0002804 Arthrogryposis multiplex congenita 
Show

 HP:0002808 Kyphosis 
Show

 HP:0003674 Age of onset 
Show

 HP:0003677 Slow progression 
Show

 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
Show

 HP:0003828 Variable expressivity 
Show

 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
Show

 HP:0010307 Stridor "Stridor is a high pitched sound resulting from turbulent air flow in the upper airway." [HPO:curators]
Show

 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
Show

 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr