ENSG00000121440


Homo sapiens

Features
Gene ID: ENSG00000121440
  
Biological name :PDZRN3
  
Synonyms : PDZ domain containing ring finger 3 / PDZRN3 / Q9UPQ7
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: p13
Gene start: 73382433
Gene end: 73624940
  
Corresponding Affymetrix probe sets: 1555587_at (Human Genome U133 Plus 2.0 Array)   212915_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000418484
Ensembl peptide - ENSP00000418168
Ensembl peptide - ENSP00000418624
Ensembl peptide - ENSP00000419250
Ensembl peptide - ENSP00000419095
Ensembl peptide - ENSP00000263666
Ensembl peptide - ENSP00000308831
NCBI entrez gene - 23024     See in Manteia.
OMIM - 609729
RefSeq - XM_017005942
RefSeq - NM_001303139
RefSeq - NM_001303140
RefSeq - NM_001303141
RefSeq - NM_001303142
RefSeq - NM_015009
RefSeq Peptide - NP_055824
RefSeq Peptide - NP_001290068
RefSeq Peptide - NP_001290069
RefSeq Peptide - NP_001290070
RefSeq Peptide - NP_001290071
swissprot - E7ENB6
swissprot - Q9UPQ7
swissprot - B7ZAG0
swissprot - C9JWE6
swissprot - H7C566
Ensembl - ENSG00000121440
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 E7FDW2ENSDARG00000073869Danio rerio
 pdzrn3aENSDARG00000073757Danio rerio
 PDZRN3ENSGALG00000007819Gallus gallus
 Pdzrn3ENSMUSG00000035357Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PDZRN4 / Q6ZMN7 / PDZ domain containing ring finger 4ENSG0000016596654
PDZD4 / Q76G19 / PDZ domain containing 4ENSG0000006784036


Protein motifs (from Interpro)
Interpro ID Name
 IPR001293  Zinc finger, TRAF-type
 IPR001478  PDZ domain
 IPR001841  Zinc finger, RING-type
 IPR008974  TRAF-like
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR036034  PDZ superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007528 neuromuscular junction development IBA
 biological_processGO:0016567 protein ubiquitination ISS
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0031594 neuromuscular junction IBA
 cellular_componentGO:0045202 synapse IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity ISS
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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