ENSG00000122435


Homo sapiens

Features
Gene ID: ENSG00000122435
  
Biological name :TRMT13
  
Synonyms : Q9NUP7 / TRMT13 / tRNA methyltransferase 13 homolog
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p21.2
Gene start: 100133150
Gene end: 100150497
  
Corresponding Affymetrix probe sets: 219130_at (Human Genome U133 Plus 2.0 Array)   232489_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000359158
Ensembl peptide - ENSP00000359160
Ensembl peptide - ENSP00000359162
Ensembl peptide - ENSP00000432616
NCBI entrez gene - 54482     See in Manteia.
RefSeq - XM_017001505
RefSeq - NM_019083
RefSeq - XM_005270945
RefSeq - XM_005270946
RefSeq - XM_017001504
RefSeq Peptide - NP_061956
swissprot - Q5VVK9
swissprot - Q5VVL2
swissprot - Q9NUP7
Ensembl - ENSG00000122435
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trmt13ENSDARG00000102846Danio rerio
 TRMT13ENSGALG00000005290Gallus gallus
 Q8BYH3ENSMUSG00000033439Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007871  Methyltransferase TRM13
 IPR021721  Zinc finger, CCCH-type, TRM13
 IPR022776  TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0030488 tRNA methylation IBA
 biological_processGO:0032259 methylation IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0008175 tRNA methyltransferase activity IBA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
tRNA modification in the nucleus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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