ENSMUSG00000033439


Mus musculus

Features
Gene ID: ENSMUSG00000033439
  
Biological name :Trmt13
  
Synonyms : Q8BYH3 / Trmt13 / tRNA methyltransferase 13
  
Possible biological names infered from orthology : Q9NUP7 / tRNA methyltransferase 13 homolog
  
Species: Mus musculus
  
Chr. number: 3
Strand: -1
Band: G1
Gene start: 116581093
Gene end: 116614587
  
Corresponding Affymetrix probe sets: 10501663 (MoGene1.0st)   1437362_at (Mouse Genome 430 2.0 Array)   1442573_at (Mouse Genome 430 2.0 Array)   1443323_at (Mouse Genome 430 2.0 Array)   1453823_a_at (Mouse Genome 430 2.0 Array)   1453824_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000142410
Ensembl peptide - ENSMUSP00000139223
Ensembl peptide - ENSMUSP00000143637
Ensembl peptide - ENSMUSP00000047320
Ensembl peptide - ENSMUSP00000138761
Ensembl peptide - ENSMUSP00000138868
NCBI entrez gene - 229780     See in Manteia.
MGI - MGI:1925219
RefSeq - XM_017319564
RefSeq - NM_030016
RefSeq - XM_006501424
RefSeq - XM_011240110
RefSeq - XM_011240111
RefSeq - XM_011240112
RefSeq Peptide - NP_084292
swissprot - V9GXM2
swissprot - A0A0G2JGN8
swissprot - V9GWW9
swissprot - Q8BYH3
swissprot - S4R2S3
swissprot - A0A0G2JDL0
Ensembl - ENSMUSG00000033439
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trmt13ENSDARG00000102846Danio rerio
 TRMT13ENSGALG00000005290Gallus gallus
 Q9NUP7ENSG00000122435Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007871  Methyltransferase TRM13
 IPR021721  Zinc finger, CCCH-type, TRM13
 IPR022776  TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0030488 tRNA methylation IBA
 biological_processGO:0032259 methylation IEA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0008175 tRNA methyltransferase activity IBA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr