ENSG00000123297


Homo sapiens

Features
Gene ID: ENSG00000123297
  
Biological name :TSFM
  
Synonyms : P43897 / TSFM / Ts translation elongation factor, mitochondrial
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: q14.1
Gene start: 57782589
Gene end: 57808071
  
Corresponding Affymetrix probe sets: 212656_at (Human Genome U133 Plus 2.0 Array)   214331_at (Human Genome U133 Plus 2.0 Array)   214332_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000406339
Ensembl peptide - ENSP00000450041
Ensembl peptide - ENSP00000448575
Ensembl peptide - ENSP00000440987
Ensembl peptide - ENSP00000439342
Ensembl peptide - ENSP00000313877
Ensembl peptide - ENSP00000388330
Ensembl peptide - ENSP00000389162
Ensembl peptide - ENSP00000390679
NCBI entrez gene - 10102     See in Manteia.
OMIM - 604723
RefSeq - NM_005726
RefSeq - NM_001172697
RefSeq - NM_001172695
RefSeq - NM_001172696
RefSeq Peptide - NP_005717
RefSeq Peptide - NP_001166166
RefSeq Peptide - NP_001166167
RefSeq Peptide - NP_001166168
swissprot - P43897
swissprot - C9JT21
swissprot - C9JG32
swissprot - F8VPA7
swissprot - F8VS27
swissprot - F8WCK2
swissprot - E5KS95
Ensembl - ENSG00000123297
  
Related genetic diseases (OMIM): 610505 - Combined oxidative phosphorylation deficiency 3, 610505
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tsfmENSDARG00000060748Danio rerio
 TsfmENSMUSG00000040521Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001816  Translation elongation factor EFTs/EF1B
 IPR009060  UBA-like superfamily
 IPR014039  Translation elongation factor EFTs/EF1B, dimerisation
 IPR018101  Translation elongation factor Ts, conserved site
 IPR036402  Elongation factor Ts, dimerisation domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 biological_processGO:0006414 translational elongation TAS
 biological_processGO:0032784 regulation of DNA-templated transcription, elongation TAS
 biological_processGO:0070125 mitochondrial translational elongation IBA
 biological_processGO:0070129 regulation of mitochondrial translation IDA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005739 mitochondrion TAS
 cellular_componentGO:0005759 mitochondrial matrix IBA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0003746 translation elongation factor activity IBA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Mitochondrial translation elongation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000648 Optic atrophy 
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 HP:0001138 Optic neuropathy 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001298 Encephalopathy 
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 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001558 Decreased fetal movement "An abnormal reduction in quantity or strength of fetal movements." [HPO:curators]
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001644 Dilated cardiomyopathy 
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 HP:0001655 Patent foramen ovale 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002119 Ventriculomegaly 
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 HP:0002151 Increased serum lactate "Abnormally increased level of blood lactate (2-hydroxypropanoic acid). Lactate is produced from pyruvate by lactate dehydrogenase during normal metabolism." [HPO:curators]
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002878 Early respiratory failure 
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 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
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 HP:0003201 Rhabdomyolysis 
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003812 Phenotypic variability 
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 HP:0003819 Death in childhood 
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 HP:0005157 Concentric hypertrophic cardiomyopathy 
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 HP:0008347 Decreased activity of mitochondrial respiratory complexes i, ii+iii, and iv 
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 HP:0008872 Feeding problems in infancy 
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 HP:0011923 Decreased activity of mitochondrial complex I "A reduction in the activity of the `mitochondrial respiratory chain complex I` (GO:0005747), which is part of the electron transport chain in mitochondria." [HPO:probinson]
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 HP:0011924 Decreased activity of mitochondrial complex III "A reduction in the activity of the `mitochondrial respiratory chain complex III` (GO:0005750), which is part of the electron transport chain in mitochondria." [HPO:probinson]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000178952 TUFM / P49411 / Tu translation elongation factor, mitochondrial  / reaction / complex






 

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