ENSG00000125454


Homo sapiens

Features
Gene ID: ENSG00000125454
  
Biological name :SLC25A19
  
Synonyms : Q9HC21 / SLC25A19 / solute carrier family 25 member 19
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: -1
Band: q25.1
Gene start: 75272981
Gene end: 75289510
  
Corresponding Affymetrix probe sets: 223222_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000464457
Ensembl peptide - ENSP00000463720
Ensembl peptide - ENSP00000463795
Ensembl peptide - ENSP00000319574
Ensembl peptide - ENSP00000364410
Ensembl peptide - ENSP00000385312
Ensembl peptide - ENSP00000397818
Ensembl peptide - ENSP00000402202
Ensembl peptide - ENSP00000462214
Ensembl peptide - ENSP00000462299
Ensembl peptide - ENSP00000462401
Ensembl peptide - ENSP00000462504
Ensembl peptide - ENSP00000463039
Ensembl peptide - ENSP00000463428
NCBI entrez gene - 60386     See in Manteia.
OMIM - 606521
RefSeq - XM_017024928
RefSeq - NM_001126121
RefSeq - NM_001126122
RefSeq - NM_021734
RefSeq - XM_005257559
RefSeq - XM_005257560
RefSeq - XM_005257561
RefSeq - XM_005257562
RefSeq - XM_006722007
RefSeq - XM_011525098
RefSeq - XM_017024926
RefSeq - XM_017024927
RefSeq Peptide - NP_001119594
RefSeq Peptide - NP_068380
RefSeq Peptide - NP_001119593
swissprot - J3KSB1
swissprot - J3KSI7
swissprot - J3KTL0
swissprot - J3QL84
swissprot - J3QLV3
swissprot - J3QS02
swissprot - Q5JPC1
swissprot - Q9HC21
swissprot - J3KRY6
swissprot - J3KS44
Ensembl - ENSG00000125454
  
Related genetic diseases (OMIM): 607196 - Microcephaly, Amish type, 607196
  613710 - Thiamine metabolism dysfunction syndrome 4 (progressive polyneuropathy type), 613710
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc25a19ENSDARG00000100385Danio rerio
 SLC25A19ENSGALG00000008011Gallus gallus
 Q9DAM5ENSMUSG00000020744Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002067  Mitochondrial carrier protein
 IPR018108  Mitochondrial substrate/solute carrier
 IPR023395  Mitochondrial carrier domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006839 mitochondrial transport IBA
 biological_processGO:0030302 deoxynucleotide transport NAS
 biological_processGO:0030974 thiamine pyrophosphate transmembrane transport IBA
 biological_processGO:0042723 thiamine-containing compound metabolic process TAS
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0071934 thiamine transmembrane transport IEA
 cellular_componentGO:0005634 nucleus HDA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005743 mitochondrial inner membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031305 integral component of mitochondrial inner membrane IBA
 molecular_functionGO:0015234 thiamine transmembrane transporter activity IBA
 molecular_functionGO:0030233 deoxynucleotide transmembrane transporter activity TAS
 molecular_functionGO:0090422 thiamine pyrophosphate transmembrane transporter activity TAS


Pathways (from Reactome)
Pathway description
Vitamin B1 (thiamin) metabolism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000185 Cleft soft palate "Cleft of the soft palate (also known as the velum, or muscular palate) as a result of a developmental defect occurring between the 7th and 12th week of pregnancy. Cleft soft palate can cause functional abnormalities of the Eustachian tube with resulting middle ear anomalies and hearing difficulties, as well as speech problems associated with hypernasal speech due to velopharyngeal insufficiency." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000253 Microcephaly, progressive "Progressive microcephaly is diagnosed when the head circumference falls progressively behind age- and gender-dependent norms." [HPO:curators]
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 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000737 Irritability 
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001254 Lethargy 
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 HP:0001265 Hyporeflexia 
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 HP:0001271 Polyneuropathy "A generalized disorder of peripheral nerves." [HPO:curators]
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001320 Cerebellar vermis hypoplasia 
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001338 Partial agenesis of the corpus callosum "A partial failure of the development of the corpus callosum." [HPO:curators]
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 HP:0001339 Lissencephaly "A congenital absence of the convolutions of the cerebral cortex and a poorly formed sylvian fissure." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0001376 Decreased mobility of joints 
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 HP:0001522 Death in infancy 
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 HP:0001558 Decreased fetal movement "An abnormal reduction in quantity or strength of fetal movements." [HPO:curators]
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001942 Metabolic acidosis 
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 HP:0001992 Organic aciduria 
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 HP:0002069 Generalized tonic-clonic seizures "Generalized tonic-clonic seizures are `generalized seizures` (HP:0002197) in which the patient suddenly loses conciousness, the eyes roll back, and the entire body musculature undergoes tonic contractions. In the clonic phase of the seizure, there are rhythmic contractions of the musculature alternating with relaxation of all muscle groups. Loss of sphincter control during the seizure is common. This form of seizure was formerly commonly called grand mal seizure." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002355 Difficulty walking 
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 HP:0002414 Spina bifida "Incomplete closure of the embryonic neural tube, whereby some vertebral arches remain unfused and open." [HPO:curators]
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 HP:0002490 Increased CSF lactate "Increased concentration of lactate in the cerebrospinal fluid." [HPO:curators]
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 HP:0002509 Limb hypertonia 
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 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003470 Paralysis "Paralysis of voluntary muscles means loss of contraction due to interruption of one or more motor pathways from the brain to the muscle fibers. Although the word paralysis is often used interchangeably to mean either complete or partial loss of muscle strength, it is preferable to use paralysis or plegia for complete or severe loss of muscle strength, and paresis for partial or slight loss. Motor paralysis results from deficits of the upper motor neurons (corticospinal, corticobulbar, or subcorticospinal). Motor paralysis is often accompanied by an impairment in the facility of movement." [HPO:curators]
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 HP:0003477 Axonal neuropathy 
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 HP:0003577 Onset at birth 
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 HP:0004331 Decreased skull ossification "A reduction in the magnitude or amount of ossification of the skull." [HPO:curators]
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 HP:0005750 Contractures of lower limbs 
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 HP:0005968 Temperature instability "Disordered thermoregulation characterized by an impaired ability to maintain a balance between heat production and heat loss, with resulting instability of body temperature." [HPO:curators]
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 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
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 HP:0011344 Severe global developmental delay "A severe delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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