ENSG00000127152


Homo sapiens

Features
Gene ID: ENSG00000127152
  
Biological name :BCL11B
  
Synonyms : B cell CLL/lymphoma 11B / BCL11B / Q9C0K0
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: -1
Band: q32.2
Gene start: 99169287
Gene end: 99271524
  
Corresponding Affymetrix probe sets: 219528_s_at (Human Genome U133 Plus 2.0 Array)   222895_s_at (Human Genome U133 Plus 2.0 Array)   224310_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000387419
Ensembl peptide - ENSP00000280435
Ensembl peptide - ENSP00000349723
NCBI entrez gene - 64919     See in Manteia.
OMIM - 606558
RefSeq - NM_001282237
RefSeq - NM_001282238
RefSeq - NM_022898
RefSeq - NM_138576
RefSeq Peptide - NP_075049
RefSeq Peptide - NP_612808
RefSeq Peptide - NP_001269166
RefSeq Peptide - NP_001269167
swissprot - D3YTK1
swissprot - L8B567
swissprot - Q9C0K0
swissprot - L8B7P7
Ensembl - ENSG00000127152
  
Related genetic diseases (OMIM): 617237 - ?Immunodeficiency 49, 617237

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 im:7142702ENSDARG00000116556Danio rerio
 BCL11BENSGALG00000031862Gallus gallus
 Rit1ENSMUSG00000048251Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
BCL11A / Q9H165 / B cell CLL/lymphoma 11AENSG0000011986657
Q8WUU4 / ZNF296 / zinc finger protein 296ENSG0000017068417


Protein motifs (from Interpro)
Interpro ID Name
 IPR013087  Zinc finger C2H2-type
 IPR026939  At2g23090-like
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0003334 keratinocyte development IEA
 biological_processGO:0003382 epithelial cell morphogenesis IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007165 signal transduction IBA
 biological_processGO:0007409 axonogenesis IEA
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0009791 post-embryonic development IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0010837 regulation of keratinocyte proliferation IEA
 biological_processGO:0019216 regulation of lipid metabolic process IEA
 biological_processGO:0021773 striatal medium spiny neuron differentiation IEA
 biological_processGO:0021902 commitment of neuronal cell to specific neuron type in forebrain IEA
 biological_processGO:0021953 central nervous system neuron differentiation IEA
 biological_processGO:0022008 neurogenesis IBA
 biological_processGO:0031077 post-embryonic camera-type eye development IEA
 biological_processGO:0033077 T cell differentiation in thymus IEA
 biological_processGO:0033153 T cell receptor V(D)J recombination IEA
 biological_processGO:0035701 hematopoietic stem cell migration IMP
 biological_processGO:0042475 odontogenesis of dentin-containing tooth IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0043368 positive T cell selection IEA
 biological_processGO:0043588 skin development IEA
 biological_processGO:0045664 regulation of neuron differentiation IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IMP
 biological_processGO:0046632 alpha-beta T cell differentiation IEA
 biological_processGO:0048538 thymus development IEA
 biological_processGO:0071678 olfactory bulb axon guidance IEA
 biological_processGO:0097535 lymphoid lineage cell migration into thymus IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0043005 neuron projection IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000695 Neonatal teeth 
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 HP:0001007 Hirsutism "Abnormally increased hair growth." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001344 Absent speech development 
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0002510 Spastic tetraplegia "Spastic paralysis affecting all four limbs." [HPO:curators]
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 HP:0002645 Wormian bones 
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 HP:0003577 Onset at birth 
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 HP:0004415 Pulmonary artery stenosis 
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 HP:0004430 Severe combined immunodeficiency "Severe combine immunodeficiency (SCID) is a primary immune deficiency that is characterized by a severe defect in both the T- and B-lymphocyte systems." [HPO:curators]
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 HP:0011123 Inflammatory abnormality of the skin "The presence of `inflammation` (MPATH:212) of the `skin` (FMA:7163). That is, an abnormality of the skin resulting from the local accumulation of fluid, plasma proteins, and leukocytes." [HPO:probinson]
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 HP:0012745 Short palpebral fissure "Distance between the medial and lateral canthi is more than 2 SD below the mean for age (objective); or, apparently reduced length of the palpebral fissures." [pmid:19125427]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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